View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3341_low_4 (Length: 238)

Name: NF3341_low_4
Description: NF3341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3341_low_4
NF3341_low_4
[»] chr1 (5 HSPs)
chr1 (135-222)||(30671519-30671606)
chr1 (1-58)||(30671385-30671442)
chr1 (171-222)||(30710210-30710261)
chr1 (170-222)||(30656393-30656445)
chr1 (170-222)||(30689452-30689504)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 30671519 - 30671606
Alignment:
Q  135 tactgaaattaacaagttttctcagaagtagctggtgcttgtactttgatgatctgacatagttaaaagttgctcaagatattcaact 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30671519 tactgaaattaacaagttttctcagaagtagctggtgcttgtactttgatgatctgacatagttaaaagttgctcaagatattcaact 30671606  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30671385 - 30671442
Alignment:
Q  1 tttgaactcaaaatatgaataaattttgtttcttctgaaaagtaataagaagagaatg 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30671385 tttgaactcaaaatatgaataaattttgtttcttctgaaaagtaataagaagagaatg 30671442  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 30710210 - 30710261
Alignment:
Q  171 gcttgtactttgatgatctgacatagttaaaagttgctcaagatattcaact 222  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  30710210 gcttgtactttgattatctgacatacttagaagttgctcaagatattcaact 30710261  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 30656393 - 30656445
Alignment:
Q  170 tgcttgtactttgatgatctgacatagttaaaagttgctcaagatattcaact 222  Q
    |||||||| |||||| ||| || || |||| ||||||||||||||||||||||    
T  30656393 tgcttgtagtttgattatcagatatggttagaagttgctcaagatattcaact 30656445  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 30689452 - 30689504
Alignment:
Q  170 tgcttgtactttgatgatctgacatagttaaaagttgctcaagatattcaact 222  Q
    ||||||||||||||| ||| || || | || ||||||||||||||||||||||    
T  30689452 tgcttgtactttgattatcagatatggatagaagttgctcaagatattcaact 30689504  T

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