View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_1 (Length: 618)
Name: NF3342_high_1
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 46274526 - 46274148
Alignment:
| Q |
13 |
aatatgcagatagggttaagcagaagagaaggttgttttatgattatgaatagccctaggtagggctaagaaaccctaaactggacagtagtgattgacg |
112 |
Q |
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| T |
46274526 |
aatatgcagatagggttaagcagaagagaaggttgttttatgattatgaatagccctaggtagggctaagaaaccctaaactggacagtagtgattgacg |
46274427 |
T |
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| Q |
113 |
cgtatatagctagcacaaatggaaaacaccaatgaaataaaagatgattggtctgaaatagaacatcaaatgtcgtctctctctttttgggtaaaaagat |
212 |
Q |
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| T |
46274426 |
cgtatatagctagcacaaatggaaaacaccaatgaaataaaagatgattggtctgaaatagaacatcaaatgtcgtctctctctttttgggtaaaaagat |
46274327 |
T |
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| Q |
213 |
ggttgttattattagggcaagtaaagtaaataattgcaaaccaggacaatgtgtttttctttccccctaactctttctgcagcttaatttcacctcagta |
312 |
Q |
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| T |
46274326 |
ggttgttattattagggcaagtaaagtaaataattgcaaaccaggacaatgtgtttttctttccccctaactctttctgcagcttaatttcacctcagta |
46274227 |
T |
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| Q |
313 |
ctcgctctgtctctcacttttgtttcttgttcttgttcattagataccaatactgttgactcagctcaaggaaacatgg |
391 |
Q |
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| T |
46274226 |
ctcgctctgtctctcacttttgtttcttgttcttgttcactagatcccaatactgttgactcagctcaaggaaacatgg |
46274148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 443 - 603
Target Start/End: Complemental strand, 46274033 - 46273873
Alignment:
| Q |
443 |
taatgcattcaatatacaagttctaaagttacaagattattaacttactattcaagactcttaaaaagtatccttaagaaactcgttagcttttcccata |
542 |
Q |
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| T |
46274033 |
taatgcattcaatatacaagttctaaagttacaagattattaacttactatttaagactcttaaagagtatccttaagaaactcgttagtttttcccata |
46273934 |
T |
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| Q |
543 |
taataatatatcatgacacggataggaacaaacaatatataatccatacatatgtggttgg |
603 |
Q |
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| T |
46273933 |
taataatatatcatgacacggataggaacaaacaatatatactccatacatacgtggttgg |
46273873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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