View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_105 (Length: 226)
Name: NF3342_high_105
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_105 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 2134722 - 2134530
Alignment:
| Q |
21 |
atgtgcctagttggctcaaggttaaaaattgatctgttatgttacgtttttagctttatcttattattgaagcacttatgacctatcactatctaggctt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2134722 |
atgtgcctagttggctcaaggttaaaaattgatctgttatgttacgtttttagctttatcttattattgaagcacttatgacctatcactatctaggctt |
2134623 |
T |
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| Q |
121 |
gggacacatgcagagagcagaaacatacaaatgtcttcttttcttcatgcaaaacgatcaaagaataaaatcagtttctttgggttctgtgct |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2134622 |
gggacacatgcagagagcagaaacatacaaatgtcttcttttcttcatgcaaaacgatcaaagaataaaatcagtttctttgggttctgtgct |
2134530 |
T |
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