View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_106 (Length: 225)
Name: NF3342_high_106
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_106 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 42391989 - 42392153
Alignment:
| Q |
14 |
cagagactaaattaatcatttacttacat-actaatgaaacatcatcaaaatgacctagaactaacatccttaaaacaaccttagaaaaggcaagataaa |
112 |
Q |
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| T |
42391989 |
cagagactaaagtgatcatttactcaaattactaatgaaacatcatcaaaatgacctagaactaacatccttaaaactaccttagacaaggcaagataaa |
42392088 |
T |
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| Q |
113 |
cttcaagaagctaagaagggaagccatggaaactgtttgagaaactggtaaaataaataaaccgc |
177 |
Q |
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| T |
42392089 |
cttcaagaagctaagaagggaagccatgaaaactgtttgagaaactggtaaaatgaataaaccgc |
42392153 |
T |
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