View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_109 (Length: 218)
Name: NF3342_high_109
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_109 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 2357814 - 2357628
Alignment:
| Q |
8 |
gaggagcagagagaggaccagctggatataatcttagccattagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgtta |
107 |
Q |
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| T |
2357814 |
gaggtgcagagagaggaccaactggatataatcttag-------ggtttctttgattatcgcttgaaggtacaccaacttgtttatatccgactttgtta |
2357722 |
T |
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| Q |
108 |
cacatttatctcttccaacgtggaagtcaagttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaag |
201 |
Q |
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| T |
2357721 |
cacatttatctcttccaacgtggaagtcaagttctgcttttgctttttccaatgtatgaggatttttcagtaacaaacatattgcccaagtaag |
2357628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 201
Target Start/End: Complemental strand, 2363096 - 2362943
Alignment:
| Q |
48 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
147 |
Q |
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| T |
2363096 |
ttagtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaacttgagcatcaagttcttcttt |
2362997 |
T |
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| Q |
148 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaag |
201 |
Q |
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| T |
2362996 |
tgcttttttcaatattagaggatttctaagcaacaaacatattgcccatgtaag |
2362943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 201
Target Start/End: Complemental strand, 2351465 - 2351312
Alignment:
| Q |
48 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
147 |
Q |
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| T |
2351465 |
ttagggtttcttttactatagcttgaaggtataccaacttaccaatatccgactcgtttacaagcctttctttgccaacgtgagtgtcaagttcttcttt |
2351366 |
T |
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| Q |
148 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaag |
201 |
Q |
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| T |
2351365 |
tgcttttttcaatacaagaggatttttcaatagtaaacatattgcccatgtaag |
2351312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 201
Target Start/End: Complemental strand, 2368842 - 2368689
Alignment:
| Q |
48 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
147 |
Q |
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| T |
2368842 |
ttagggtttctttgacaatggcttgaagatacaccaacttgtctatgtctgtctctcttacacacctctcttttccaacttgagtatcaagttcttcttt |
2368743 |
T |
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| Q |
148 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaag |
201 |
Q |
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| T |
2368742 |
tgctttttccaatattagaggatttctaagtaacaaacatattgcccatgtaag |
2368689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 2307242 - 2307178
Alignment:
| Q |
137 |
agttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaag |
201 |
Q |
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| T |
2307242 |
agttcttcttttgctttttccattacaagaggattgttcaatagcaaacatagtgcccatgtaag |
2307178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 48 - 195
Target Start/End: Complemental strand, 4305794 - 4305647
Alignment:
| Q |
48 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
147 |
Q |
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||||||||||||||| |||| |||||||||| |||||||| | ||||||||||| | ||||||| | ||| | ||||| |||| |||||||||| ||| |
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| T |
4305794 |
ttagggtttctttgactatcgcttgaaggtataccaacttgtctatatccgactcttttacacacctctctttgccaacttggatgtcaagttcttcttg |
4305695 |
T |
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| Q |
148 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgccca |
195 |
Q |
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| T |
4305694 |
tgctttttctattacaagaggattttccagtaacaaacacattgccca |
4305647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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