View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_11 (Length: 462)
Name: NF3342_high_11
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 103 - 446
Target Start/End: Complemental strand, 40518965 - 40518628
Alignment:
| Q |
103 |
atacaaaacataattattattattattttgacagattagaaaacatggaaattattgattgatacctaattataatttcagcataaggtaagtaattaac |
202 |
Q |
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| T |
40518965 |
atacaaaacataattattattatt---ttgacagattagaaaacatggaagttattgattgatacctaattataatttcagcataaggtaagtaattaac |
40518869 |
T |
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| Q |
203 |
tatctaacccatcggtggtggaggaagtaaatatgccaagaaccctcttcaccacagctcctctttttggaagtaccgtcggttttaaacccttcatcat |
302 |
Q |
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| T |
40518868 |
tatctaacccatcggtggtggaggaagtaaatatgccaagaaccctcttcaccacagctcctctttttggaagtaccgtcggttttaaacccttcatcat |
40518769 |
T |
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| Q |
303 |
ccttgcaccattagaagaggagttggaatctccagtgttggtaggttgttgatgagatattgatgctgattcagttgaaccgtattgttgattcttcctg |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40518768 |
ccttgcaccattagaagaggagttggaatctccagtgttggtaggttgttgatgaga---tgatgctgattcagttgaaccgtattgttgattcttcctg |
40518672 |
T |
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| Q |
403 |
ccttcactcatccttgactcagactaggaattgaactgtgatga |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40518671 |
ccttcactcatccttgactcagactaggaattgaactgtgatga |
40518628 |
T |
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