View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3342_high_113 (Length: 213)
Name: NF3342_high_113
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_113 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 31281333 - 31281517
Alignment:
| Q |
13 |
caaaggagagaatttgactaatgagtatttcattgactccaaaattaaaggaaagaaagaggcagataaaatagtttgaatatgaaatagatatgatttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31281333 |
caaaggagagaatttgactaatgagtatttcattgactccaacattaaaggaaagaaagaggcagataaaatagtttgaatatgaaatagatatgatttg |
31281432 |
T |
|
| Q |
113 |
gcaactaaaatccctaattaatagcagtataaccacaataaaaggaacacagtttgttccctattgtttctctcatggaattaag |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31281433 |
gcaactaaaatccctaattaatagcagtataaccacaataaaaggaacacagtttgttccctattgtttctctcatggaattaag |
31281517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University