View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_19 (Length: 426)
Name: NF3342_high_19
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 40770988 - 40771400
Alignment:
| Q |
1 |
aatcccccaaaaaagaacaaagaatcaaagtatcaaaccttggtttcacaggcggtaacatcataacgaaaaagtcctctttgcatgcgatcttcccact |
100 |
Q |
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| T |
40770988 |
aatcccccaaaaaagaacaaagaatcaaagtatcaaaccttggtttcacaggcggtaacatcataacgaaaaagtcctctttgcatgcgatcttcccact |
40771087 |
T |
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| Q |
101 |
gaaatgaaaagagtaatagaccttttaaacaaaaagatnnnnnnnnnnn---ttaaaatctttaatcattcttcataatcaaaattcaataatcacctct |
197 |
Q |
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| T |
40771088 |
gaaatgaaaagagtaatagaccttttaaacaaaaagataaaaaaaattaaaattaaaatctttaatcattcttcataatcaaaattcaataatcacctct |
40771187 |
T |
|
| Q |
198 |
ccaagaacaagtgagtccaaaaaggccataggaagctcctcttgacactcatggatagccaaatccttttcagttactttgtcaatctttttaaaagcat |
297 |
Q |
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| T |
40771188 |
ccaagaacaagtgagtccaaaaaggccataggaagctcctcttgacactcatggatagccaaatccttttcggttactttgtcaatctttttaaaagcat |
40771287 |
T |
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| Q |
298 |
acaaaggtagctttgcatctattaacaaaacaataaccaaaatcacaaaaattaatcttttttatccataagcccataaccaaactaaataataatacat |
397 |
Q |
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| T |
40771288 |
acaaaggtagctttgcatctattaacaaaacaataaccaaaatcacaaaaattaatcttttttatccataagcccataaccaaactaaataataatacat |
40771387 |
T |
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| Q |
398 |
gcatggcaacaac |
410 |
Q |
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| T |
40771388 |
gcatggcaacaac |
40771400 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 21012792 - 21012859
Alignment:
| Q |
33 |
tcaaaccttggtttcacaggcggtaacatcataacgaaaaagtcctctttgcatgcgatcttcccact |
100 |
Q |
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||||||||||||||||||||| |||||||| ||||| || | ||||| ||||||||||| ||||||| |
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| T |
21012792 |
tcaaaccttggtttcacaggcagtaacatcgtaacggaacaaccctctctgcatgcgatcctcccact |
21012859 |
T |
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