View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_2 (Length: 616)
Name: NF3342_high_2
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 18 - 604
Target Start/End: Complemental strand, 38486270 - 38485684
Alignment:
| Q |
18 |
gttggtcatacttaacaagaacagaataatagtccttctcattctcatccctccctgtgcgaacctcatcaacataggcaactcttagggcttcattgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486270 |
gttggtcatacttaacaagaacagaataatagtccttctcattctcatccctccctgtgcgaacctcatcaacataggcaactcttagggcttcattgtt |
38486171 |
T |
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| Q |
118 |
tttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatctgacaagcaatcacatatgtgaatttcattaatgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38486170 |
tttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatctgacaagcgatcacatatgtgaatttcattaatgca |
38486071 |
T |
|
| Q |
218 |
gttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaaaatgatgacttttgcgagttgataccgtctggaatatcttgattcgttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486070 |
gttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaaaatgatgacttttgcgagttgataccgtctggaatatcttgattcgttg |
38485971 |
T |
|
| Q |
318 |
gaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagcttgagggccttatagtagtacatcattcctctaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38485970 |
gaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagcttgagggccttatagtagtacatcattcctctaac |
38485871 |
T |
|
| Q |
418 |
agtccgcgatagtgtctggcctctataggatgcccatgacctcaattctcttagtttatctgtccatatctcacggtctttcatcatcccctctcgcctc |
517 |
Q |
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| T |
38485870 |
agtccgcgatagtgtctggcctctataggatgcccatgacctcaattctcttagtttatctgtccatatctcacggtctttcatcatcccctctcgcctc |
38485771 |
T |
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| Q |
518 |
attctctccataaaattcttccattcatcttcatatatagtctgcagatagtatagagttgatatcccatcttcattcccagttctg |
604 |
Q |
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| T |
38485770 |
attctctccataaaattcttccattcatcttcatatatagtctgcagatagtatagagttgatatcccatcttcattcccagttctg |
38485684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 319 - 600
Target Start/End: Complemental strand, 30120359 - 30120078
Alignment:
| Q |
319 |
aacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagcttgagggccttatagtagtacatcattcctctaaca |
418 |
Q |
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|||||| || |||||||||||| || || | ||||||||||||||| ||||| | ||| | |||||||||| |||||| ||||||||||||||||| |
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| T |
30120359 |
aacaagctcgcgtgagccttctcgaatgtccatttctgatgcagaatccagaaatgtcaacatcttgagggcccgatagtaatacatcattcctctaact |
30120260 |
T |
|
| Q |
419 |
gtccgcgatagtgtctggcctctataggatgcccatgacctcaattctcttagtttatctgtccatatctcacggtctttcatcatcccctctcgcctca |
518 |
Q |
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|||||||||||||| ||||||| ||||| ||||| |||||| ||||| |||||||| ||||| | |||| |||||||||||||||||| || | || |
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| T |
30120259 |
gtccgcgatagtgtttggcctcggtaggaagcccacagcctcaaatctctaagtttatcagtccacagatcactgtctttcatcatcccctcccgacgca |
30120160 |
T |
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| Q |
519 |
ttctctccataaaattcttccattcatcttcatatatagtctgcagatagtatagagttgatatcccatcttcattcccagt |
600 |
Q |
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| T |
30120159 |
tcctctccagaaaattcttccactcatcatcataaatagtctgcaaatagtacagggttgaaaccccgtcttcattctcagt |
30120078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 82 - 258
Target Start/End: Complemental strand, 30120611 - 30120432
Alignment:
| Q |
82 |
ctcatcaacataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatc |
181 |
Q |
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|||||| ||||| ||||||| || ||||||||||||||||||| |||||||||||| || ||||| |||||||| || |||| ||||||||||| ||| |
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| T |
30120611 |
ctcatccacatatgcaactcgaagagcttcattgtttttcattagatacaaaatttcctcagcatggggatccttcttttccttctgagttccataaatc |
30120512 |
T |
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| Q |
182 |
tgacaagcaatcacatatgtgaatttcattaatgcagttccatagtcatggccttt---gaacaaacttactgtactgct |
258 |
Q |
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|||||||||| |||||||||||||||||| || ||||| ||||| || |||||||| ||||||||||||| |||||| |
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| T |
30120511 |
tgacaagcaaccacatatgtgaatttcatcaaagcagtcccatactcgtggcctttaaataacaaacttactgaactgct |
30120432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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