View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_29 (Length: 361)
Name: NF3342_high_29
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 87 - 345
Target Start/End: Original strand, 8997153 - 8997411
Alignment:
| Q |
87 |
gccatgcaccagaatcggagccgcacagtggaatttcaatcaaatgctttgtaagaagtatagatacataaaagaatagaaagcaaatttagaaccactg |
186 |
Q |
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| T |
8997153 |
gccatgcaccagaatcggagccgcacagtggaatttcaatcaaatgctttgtaagaagtatagatacataaaagaatagaaagcaaatttagaaccactg |
8997252 |
T |
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| Q |
187 |
atgctaaatttcattcacactaaaaagcttcgttataaattaaacacctcaaaacaaaattgggatattctgttagtatccgtatcgatgccccatgaga |
286 |
Q |
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| T |
8997253 |
atgctaaatttcattcacactaaaaagcttcattataaattaaacacctcaaaacaaaattgggatattctgttagtatccgtatcgatgccccatgaga |
8997352 |
T |
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| Q |
287 |
agaaacttgcagctacctatgtaaactaagatcctccaaggttgttcagtggttgtttt |
345 |
Q |
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| T |
8997353 |
agaaacttgcagctacctatataaactaagatcctccaaggttgttcagtggttgtttt |
8997411 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 30873051 - 30873110
Alignment:
| Q |
93 |
caccagaatcggagccgcacagtggaatttcaatcaaatgctttgtaag-aagtatagat |
151 |
Q |
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| T |
30873051 |
caccagaatcggagccgcacagtggaatatgaatcagctgctttgtaagaaagtatagat |
30873110 |
T |
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