View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_30 (Length: 352)
Name: NF3342_high_30
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_30 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 19923784 - 19924143
Alignment:
| Q |
11 |
cagagaaggtaagagacaatatttgttgtcaagggggtggtaccatcaaaagcatagaaatagttgaaccaccaaaacccaagccagcacca------cc |
104 |
Q |
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| T |
19923784 |
cagagaaggtaagagacaatatttgttgtcaagggggtggtaccatcaaaagcatagaaatagttgaaccaccaaaacccaagccagcacctgagaagcc |
19923883 |
T |
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| Q |
105 |
caaagagcaagnnnnnnngcccgtggccgaggcaaagccgattgcacaacctggcccgcctaaacaaaatccaagtccagctccag------------ct |
192 |
Q |
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| T |
19923884 |
caaagagccagaaaaaaagcccgtgcccgaggcaaagccgattgcacaacctggcccgcctaaacaaaatccaagtccagctccagctccggcaccagct |
19923983 |
T |
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| Q |
193 |
ccggctcaggcaccggctccacttccttccgcggctgcaccagctgtaatgtttcctcagacagcgccaatgtccattcttgcatatccttcgccagttg |
292 |
Q |
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| T |
19923984 |
ccggctcaggcaccggctccacttccttccgcggctgcaccagctgtaatgtttcctcagacagcgccaatgtccattcttgcatatccttcgccagttg |
19924083 |
T |
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| Q |
293 |
ttccttatgggcatgtttatggtcctggacaaggtggccccccacagttttatgggaggc |
352 |
Q |
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| T |
19924084 |
ttccttacgggcatgtttatggtcctggacaaggtggccccccacagttttatgggaggc |
19924143 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 56012837 - 56012770
Alignment:
| Q |
13 |
gagaaggtaagagacaatatttgttgtcaagggggtggtaccatcaaaagcatagaaatagttgaacc |
80 |
Q |
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| T |
56012837 |
gagaagataagagacaagatttgttgcaaaggttgtggtgccatcaaaagcatagaaattgtcgaacc |
56012770 |
T |
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