View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3342_high_31 (Length: 347)

Name: NF3342_high_31
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3342_high_31
NF3342_high_31
[»] chr2 (16 HSPs)
chr2 (189-342)||(35348491-35348644)
chr2 (180-292)||(35343846-35343958)
chr2 (70-136)||(35348424-35348490)
chr2 (1-70)||(35348320-35348389)
chr2 (1-70)||(35371482-35371551)
chr2 (1-66)||(35368116-35368181)
chr2 (1-70)||(35343629-35343698)
chr2 (1-66)||(35355589-35355654)
chr2 (1-61)||(35345987-35346047)
chr2 (79-139)||(35371372-35371432)
chr2 (1-51)||(35364256-35364306)
chr2 (1-49)||(35374296-35374344)
chr2 (87-141)||(35355370-35355425)
chr2 (1-62)||(35351004-35351065)
chr2 (10-66)||(35335492-35335548)
chr2 (10-66)||(35340577-35340634)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 189 - 342
Target Start/End: Original strand, 35348491 - 35348644
Alignment:
Q  189 aaagagtgttaagttttgaacaatgatacttggcacgaaaacaatttcgcacaaaacacacgagttagtgtgtagcccagttaggttccattttaattct 288  Q
    |||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  35348491 aaagagtgttaagttttgaacaatgatacttggcacgacaagaatctcgcacaaaacacacgagttagtatgtagcacacttaggttccattttaattct 35348590  T
Q  289 aacttaaaataactcgcctcaagcaatgataggattcgcgacatctgtgctgct 342  Q
    |||| |||||||||||||||||||||| |||||||| |||| ||||||| ||||    
T  35348591 aactcaaaataactcgcctcaagcaataataggatttgcgatatctgtggtgct 35348644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 35343846 - 35343958
Alignment:
Q  180 atcaatacgaaagagtgttaagttttgaacaatgatacttggcacgaaaacaatttcgcacaaaacacacgagttagtgtgtagcccagttaggttccat 279  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||  ||||||||||||||||| |||||| ||   | |||||||    
T  35343846 atcaatacaaaagagtgttaagttttgaataatgatacttggcacaaaaataatttcgcgtaaaacacacgagttagtatgtagctcacacatgttccat 35343945  T
Q  280 tttaattctaact 292  Q
    |||||||| ||||    
T  35343946 tttaattccaact 35343958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 35348424 - 35348490
Alignment:
Q  70 tcgtttattgttcgaatttagtacttaactattagtttgttagtgcctgtaaataggctggatgtca 136  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  35348424 tcgtttattgttcgaatttagtacttaactatttgtttgttagtgcctgtaaataggctcgatgtca 35348490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35348320 - 35348389
Alignment:
Q  1 acgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtcttct 70  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35348320 acgatgatggtggttacgactatgctcccactgcctaaaactctaatgtgttaacttacattagtcttct 35348389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 35371551 - 35371482
Alignment:
Q  1 acgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtcttct 70  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35371551 acgacgacggtggttatgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtcttct 35371482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35368181 - 35368116
Alignment:
Q  1 acgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtc 66  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35368181 acgatgacggtggttatgactatgctcccgctgcataaaactctaatgtgttaacttacattagtc 35368116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35343629 - 35343698
Alignment:
Q  1 acgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtcttct 70  Q
    |||||||  ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||    
T  35343629 acgatgatggtggttacgactatgctccagccgcctaaaacactaatgtgttaacttacattagtcttct 35343698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35355654 - 35355589
Alignment:
Q  1 acgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtc 66  Q
    |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  35355654 acgatgacggtggttatgactatgctcctgctgcctaaaactctaatgtgttaacttacataagtc 35355589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 35346047 - 35345987
Alignment:
Q  1 acgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacat 61  Q
    |||||||  ||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  35346047 acgatgatggtggttatgactatgctcccgctgcgtaaaactctaatgtgttaacttacat 35345987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 35371432 - 35371372
Alignment:
Q  79 gttcgaatttagtacttaactattagtttgttagtgcctgtaaataggctggatgtcatta 139  Q
    ||||||| ||||||||||||||||||||||||| ||| | |||||||||| ||||||||||    
T  35371432 gttcgaaattagtacttaactattagtttgttattgcttataaataggctagatgtcatta 35371372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35364306 - 35364256
Alignment:
Q  1 acgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgt 51  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  35364306 acgatgacggtggttatgactatgctcccgctgcataaaactctaatgtgt 35364256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35374344 - 35374296
Alignment:
Q  1 acgatgacagtggttacgactatgctcccgctgcctaaaactctaatgt 49  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  35374344 acgatgacggtggttatgactatgctcccgctgcataaaactctaatgt 35374296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 35355425 - 35355370
Alignment:
Q  87 ttagtacttaactattagtttgttagtgcct-gtaaataggctggatgtcattata 141  Q
    |||||||||||||||||||||||||||||||  | |||||||| ||||||||||||    
T  35355425 ttagtacttaactattagtttgttagtgcctatttaataggctcgatgtcattata 35355370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35351065 - 35351004
Alignment:
Q  1 acgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacatt 62  Q
    |||||||  ||||||| ||||| ||||||||||| ||| ||||||||||| |||||||||||    
T  35351065 acgatgatggtggttatgactacgctcccgctgcataagactctaatgtgctaacttacatt 35351004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 35335548 - 35335492
Alignment:
Q  10 gtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtc 66  Q
    ||||||| ||||||||||||||||| ||||    |||||||||||||||||||||||    
T  35335548 gtggttatgactatgctcccgctgcataaagtagtaatgtgttaacttacattagtc 35335492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 35340634 - 35340577
Alignment:
Q  10 gtggttacgactatgctcccgctgcctaaaa-ctctaatgtgttaacttacattagtc 66  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||| |||||| |||||||    
T  35340634 gtggttatgactatgctccagctgcataaaaactctaatgtgtgaacttatattagtc 35340577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University