View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_32 (Length: 347)
Name: NF3342_high_32
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_32 |
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| [»] scaffold2079 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 6346385 - 6346702
Alignment:
| Q |
13 |
aaaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttga |
112 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6346385 |
aaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagttcttga |
6346484 |
T |
|
| Q |
113 |
tgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatacttgcatt |
212 |
Q |
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|||||| ||| | | |||| | |||||||||||||| | || ||||||||||||||||||| ||||| | ||||||||||||||| || ||||||| ||| |
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| T |
6346485 |
tgtgaagctgtagcattgtcacaagcaccaaaaccaagtagtaaagagcaaccatgaaaaccaaagccatcagaagtggtgatttttcgatacttgtatt |
6346584 |
T |
|
| Q |
213 |
tgttgttgcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaa |
312 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6346585 |
cgttgttgcaaacccaattattgcgaacaatagctcaaaaaattggcttaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaa |
6346684 |
T |
|
| Q |
313 |
aagaaaatgttagcaata |
330 |
Q |
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|| ||||||||||||||| |
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| T |
6346685 |
aataaaatgttagcaata |
6346702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 6219725 - 6219562
Alignment:
| Q |
13 |
aaaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttga |
112 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6219725 |
aaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttga |
6219626 |
T |
|
| Q |
113 |
tgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
176 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6219625 |
tgtgaatctgtaacattgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
6219562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 57 - 314
Target Start/End: Complemental strand, 6242845 - 6242588
Alignment:
| Q |
57 |
tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaa |
156 |
Q |
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||||| ||||||||||||||||| ||| ||||||||| |||||||||| || |||||||||| ||| ||| |||| | |||||||||| | | | || || |
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| T |
6242845 |
tgaaataacacttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaagctaggtagtaa |
6242746 |
T |
|
| Q |
157 |
agagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatacttgcatttgttgttgcaaacccgattattgcaaacaatagctcaaaaaatt |
256 |
Q |
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||| || |||||| ||||| | || ||| | ||||| | | |||| ||| ||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
6242745 |
agaaaaatagcgaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaatagcttgaaaaatt |
6242646 |
T |
|
| Q |
257 |
ggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa |
314 |
Q |
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||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
6242645 |
ggccaaataattctccaacttcattcaatctagaaagggttgaatgaattcaagaaaa |
6242588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 6333269 - 6333434
Alignment:
| Q |
14 |
aaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgat |
113 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||| ||| | |||| || | |||| ||| |||||||| |
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| T |
6333269 |
aaatccaagcaattgtaggagaaattatcatcaaagctaaaactgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaagaaactcttgat |
6333368 |
T |
|
| Q |
114 |
gtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc |
179 |
Q |
| |
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||||| || ||| ||| | |||||||||| ||| | || |||||| |||||||||||||||||| |
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| T |
6333369 |
gtgaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc |
6333434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 6326013 - 6326107
Alignment:
| Q |
220 |
gcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa |
314 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| |||||||||||| |
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| T |
6326013 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaagaaaa |
6326107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 6333490 - 6333599
Alignment:
| Q |
220 |
gcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaagaaaa |
319 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| |||||||| |||| ||| |
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| T |
6333490 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaag-aaagtaaa |
6333588 |
T |
|
| Q |
320 |
tgttagcaata |
330 |
Q |
| |
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|||||| |||| |
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| T |
6333589 |
tgttaggaata |
6333599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 6325792 - 6325957
Alignment:
| Q |
14 |
aaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgat |
113 |
Q |
| |
|
||||||| |||||||| | ||||| | ||| ||||| | || ||||||||||||||||||||||| ||| | |||| || | |||| ||| |||||||| |
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| T |
6325792 |
aaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaatgaatctcttgat |
6325891 |
T |
|
| Q |
114 |
gtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc |
179 |
Q |
| |
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|||||| || | | |||| | |||||||||| ||| | || |||||| |||||||||||||||||| |
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| T |
6325892 |
gtgaatatgtatcattgttacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc |
6325957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 909 - 823
Alignment:
| Q |
219 |
tgcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaat |
305 |
Q |
| |
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||||||||||| |||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |
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| T |
909 |
tgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaat |
823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 1096 - 992
Alignment:
| Q |
14 |
aaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgat |
113 |
Q |
| |
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|||||||||||||||| | ||||| | |||||| || | || ||||||||||||||||||||||| ||| |||||||||||||| ||||| || ||||| |
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|
| T |
1096 |
aaatccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggaggaaactattgat |
997 |
T |
|
| Q |
114 |
gtgaa |
118 |
Q |
| |
|
||||| |
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|
| T |
996 |
gtgaa |
992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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