View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_34 (Length: 335)
Name: NF3342_high_34
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 40252856 - 40252546
Alignment:
| Q |
18 |
aattcccgcctcgttgcacttgcttcctccatgaaaactgaaactcccattaaaacaacaacctccacttcattccttcaccataaggaatctggttttc |
117 |
Q |
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| T |
40252856 |
aattcccgcctcgttgcacttgcttcctccatgaaaactgaaactcccattaaaacaacaacctccacttcattccttcaccataaggaatctggttttc |
40252757 |
T |
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| Q |
118 |
tccatttcgctaagtatcacggtctcggaaacgacttcgttttggtgagtacacgtttcataagtttctcattcaaataactatcggttttaggttttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40252756 |
tccatttcgctaagtatcacggtctcggaaacgacttcgttttggtgagtacacgtttcataagtttctcattcaaataactatcggttttaggttttga |
40252657 |
T |
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| Q |
218 |
accattttttatgttatgaatagattgataatagagactcttctgagccaaagattagttcagagaaagctgtacaactatgtgatcgtaactttggtgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40252656 |
accattttttatgttatgaatagattgataatagagactcttctgagccaaagattagttcagagaaagctgtacaactatgtgatcgtaactttggtgt |
40252557 |
T |
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| Q |
318 |
tggtgatgatg |
328 |
Q |
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||||| ||||| |
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| T |
40252556 |
tggtgctgatg |
40252546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 231 - 322
Target Start/End: Complemental strand, 26881033 - 26880942
Alignment:
| Q |
231 |
ttatgaatagattgataatagagactcttctgagccaaagattagttcagagaaagctgtacaactatgtgatcgtaactttggtgttggtg |
322 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||||||| |
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| T |
26881033 |
ttatgaatagatcgataatagagactcttctgagccaaagattagttccgagaaagttgtgcaactctgtgatcgtaacttcagtgttggtg |
26880942 |
T |
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