View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_35 (Length: 335)
Name: NF3342_high_35
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 38935254 - 38934945
Alignment:
| Q |
9 |
agcacagactatgagggtgacagaaaagtgtgatgtgtatagttttggagtggtggtgttagagataatgatgggaaaacaccctggagaattcttgggc |
108 |
Q |
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| T |
38935254 |
agcacaaactatgagggtgacagaaaagtgtgatgtgtatagttttggagtggtggtgttggagataatgatgggaaaacaccctggagaattcttgggc |
38935155 |
T |
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| Q |
109 |
accctaaattcaaataagtctttgacatcaatggaagtgcttgtgaaggatgttgtggaccaaaggcttccacctccaacagggaaattagctgaaacaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38935154 |
accctaaattcaaataagtctttgacatcaatggaagtgcttgtgaaggatgttgtggaccaaaggcttccacctccaacagggaaattagctgaaacaa |
38935055 |
T |
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| Q |
209 |
tagtgtttgccatgaacgtagctttatcatgcacacgtgctgctcctgagtctagacccatgatgcgttctgttgcacaagaattatctgcttctacaca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38935054 |
tagtgtttgccatgaacgtagctttatcatgcacacgtgctgctcctgagtctagacccatgatgcgttctgttgcacaagaattatctgcttctaaaca |
38934955 |
T |
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| Q |
309 |
ggcttccctt |
318 |
Q |
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|||||||||| |
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| T |
38934954 |
ggcttccctt |
38934945 |
T |
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