View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_38 (Length: 318)
Name: NF3342_high_38
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 186 - 308
Target Start/End: Original strand, 2793395 - 2793517
Alignment:
| Q |
186 |
ttatatcgattcctaaaccgaaaaaactgtttgacacctgtttctttcatacttccaatttgcaggctcttcctgtattcctatataaaatcaccaatcc |
285 |
Q |
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| T |
2793395 |
ttatatcgattcctaaaccgaaaaaactgtttaacacccgttgctttcaaacttccaatctgcaggctcttcctatattcctatataaaatcaccaatcc |
2793494 |
T |
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| Q |
286 |
atttcttgccatcattgtctctg |
308 |
Q |
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| T |
2793495 |
atttcttgccatcattgtctctg |
2793517 |
T |
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Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 2793203 - 2793312
Alignment:
| Q |
1 |
cagttttatatagaacactatggtgtcgttcgat---tgttgttgttgttgtaat----aaaacaacatatagattatatgaaataactagttatacata |
93 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2793203 |
cagttttttatagaacactatggtgtcgttcgatttatgttgttgttgttgttataatgaaaacaacatatagattatatgaaataactagttatacata |
2793302 |
T |
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| Q |
94 |
agtgctttta |
103 |
Q |
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| T |
2793303 |
agtgctttta |
2793312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 48668020 - 48668099
Alignment:
| Q |
229 |
ctttcatacttccaatttgcaggctcttcctgtattcctatataaaatcaccaatccatttcttgccatcattgtctctg |
308 |
Q |
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|||||| ||||||||| |||||||||||||| ||| |||| ||||| || ||||| ||||||||| |||||| |||||| |
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| T |
48668020 |
ctttcaaacttccaatctgcaggctcttcctatatacctagataaactcttcaatcaatttcttgctatcattctctctg |
48668099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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