View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_40 (Length: 315)
Name: NF3342_high_40
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_40 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 4971280 - 4971594
Alignment:
| Q |
1 |
atctttatattgcaaccacaattgtagtactgaatagtatgacttgtgttcttgtagggacctaaatgggctatcattggaagggacattggctcctgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4971280 |
atctttatattgcaaccacaattgtagtactgaatagtatgacttgtgttcttgtagggacctaaatgggctatcattggaagggacattggctcctgag |
4971379 |
T |
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| Q |
101 |
cttgggaaactaagtcacttaaaatctctgtaaggaatctaatattgatgttcttctgttagaatatgcatttttctaacaaatatgcattttttaaaag |
200 |
Q |
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| T |
4971380 |
cttgggaaactaagtcacttaaaatctctgtaaggaatctaatattgatgttcttctgttagaatatgcatttttctaacaaatgtgcattttttaaaag |
4971479 |
T |
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| Q |
201 |
gaaatcatctttcaatgtaggattctgttatatatagtactattagatagataccataaatttaattttgtgtgcaggatcttgttaccttgactactac |
300 |
Q |
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| T |
4971480 |
gaaatcatctttcaatgtaggattctgttatatatagtactattagatagataccataaatttaattttgtgtgcaggatcttgttaccttgactactac |
4971579 |
T |
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| Q |
301 |
catttatgtcaataa |
315 |
Q |
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||||||||||||||| |
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| T |
4971580 |
catttatgtcaataa |
4971594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 4989189 - 4989503
Alignment:
| Q |
1 |
atctttatattgcaaccacaattgtagtactgaatagtatgacttgtgttcttgtagggacctaaatgggctatcattggaagggacattggctcctgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4989189 |
atctttatattgcaaccacaattgtagtactgaatagtatgacttgtgttcttgtagggacctaaatgggctatcattggaagggacattggctcctgag |
4989288 |
T |
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| Q |
101 |
cttgggaaactaagtcacttaaaatctctgtaaggaatctaatattgatgttcttctgttagaatatgcatttttctaacaaatatgcattttttaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4989289 |
cttgggaaactaagtcacttaaaatctctgtaaggaatctaatattgatgttcttctgttagaatatgcatttttctaacaaatgtgcattttttaaaag |
4989388 |
T |
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| Q |
201 |
gaaatcatctttcaatgtaggattctgttatatatagtactattagatagataccataaatttaattttgtgtgcaggatcttgttaccttgactactac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4989389 |
gaaatcatctttcaatgtaggattctgttatatatagtactattagatagataccataaatttaattttgtgtgcaggatcttgttaccttgactactac |
4989488 |
T |
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| Q |
301 |
catttatgtcaataa |
315 |
Q |
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||||||||||||||| |
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| T |
4989489 |
catttatgtcaataa |
4989503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 35835092 - 35835005
Alignment:
| Q |
49 |
ttcttgtagggacctaaatgggctatcattggaagggacattggctcctgagcttgggaaactaagtcacttaaaatctctgtaagga |
136 |
Q |
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|||||| |||||||||||||| | ||||||||||||||||||| ||||| | ||||||||||| | |||||||||||||||||||||| |
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| T |
35835092 |
ttcttgcagggacctaaatggccaatcattggaagggacattgactcctcatcttgggaaacttaatcacttaaaatctctgtaagga |
35835005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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