View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_5 (Length: 566)
Name: NF3342_high_5
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 2 - 546
Target Start/End: Original strand, 43702949 - 43703495
Alignment:
| Q |
2 |
ggatgtcgaagaaaatgctgctcttctcgattacatcagttctgtaagttccacttagcactcttgtgctcactttttaattctatagagaacaatgaac |
101 |
Q |
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| T |
43702949 |
ggatggcgaagcaaatgctgctcttctcgattacatcagttctgtaagttccacttagcactcttgtgctcactttttaattctatagagaacaatgaac |
43703048 |
T |
|
| Q |
102 |
attaacagtgagactcaaataatgaacatcaacagttacacttatgcagagaaatttacaccaaagtttcatgttagacttgctttttgagcaaaataaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43703049 |
attaacagtgagactcaaataatgaacatcaacagttacacttatgcagagaaatttacaccaaagtttcatgttagacttgctttttgagcaaaataaa |
43703148 |
T |
|
| Q |
202 |
acatactttatttcactacaaagtttaaacttggttttattcacattacttttatcaccaacatgagttggtccgacttgaaggggctcggatcccttga |
301 |
Q |
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| T |
43703149 |
acatactttatttcactacaaagtttaaactttgttttattcacattacttttatcgccaacatgagttggtccgacttgaaggggctcggatcccttga |
43703248 |
T |
|
| Q |
302 |
gcaagaggtataggattcaaaatttagtttttgtgaatcaagcaaattctgttgggagaggcatacattgtgtttgatagtatctcgagggattagtctt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43703249 |
gcaagaggtataggattcaaaatttagtttttgtgaatcaagcaaattctgttgggagaggcctacattgtgtttgatagtatctcgagggattagtctt |
43703348 |
T |
|
| Q |
402 |
tcaattgcatgcagagaatactttggttt---nnnnnnnnnnncaattttataaacttatgttcatctaaaaccacctttatcgaacacttgcccaaatg |
498 |
Q |
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|||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43703349 |
tcaattgcatgcctggaatactttgggtttaccaaaaaaaaaacaattttataaacttatgtttatctaaaaccacctttatcgaacacttgcccaaatg |
43703448 |
T |
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| Q |
499 |
cacactctttttcgtattgataatgaattacttttgttggttcaacca |
546 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43703449 |
cacactttttttcgtattgataatgaattacttttgtt-gttcaacca |
43703495 |
T |
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