View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_54 (Length: 281)
Name: NF3342_high_54
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_54 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 31797346 - 31797614
Alignment:
| Q |
1 |
agaagatgcagaatcctctagaattttacgagttagtagtcattactcttgatgattatctacctagttttggccttgtatgagcaataatgcagtattc |
100 |
Q |
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| T |
31797346 |
agaagatgcagaatcctctagacttttacgagttagtagtcattactcttgatgattatctacctagttttggccttgtatgagcaataatgcagtattc |
31797445 |
T |
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| Q |
101 |
tgatgatgtttcacattttcattgtctttttatgcaggatatcatagtcccagctctcacatgaacaaaggcattgagttttcagtttcaagtttatcaa |
200 |
Q |
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| T |
31797446 |
tgatgatgtttcacattttcattgtctttttatgc------------tcccagctctcacatgaacaaaagcattgagttttcagtttcaagtttatcaa |
31797533 |
T |
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| Q |
201 |
tggttccaggaatcccaagcaagcctatacttgcaaagtatatactatttcatatattggccccctgctcatgcatttcta |
281 |
Q |
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| T |
31797534 |
tggttcgaggaatcccaagcaagcctatacttgcaaagtatatactatttcatatattggccccctgctcatgcatttcta |
31797614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 59 - 263
Target Start/End: Original strand, 31786007 - 31786209
Alignment:
| Q |
59 |
tctacctagttttggccttgtatgagcaataatgcagtattctgatgatgtttcacattttcattgtctttttatgcaggatatcatagtcccagctctc |
158 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
31786007 |
tctacctagttttggccttgtatgagcaataatgcagtattctgatgatgtttcatattttcattgtctttttatgcaggatatcatagtaccaactctc |
31786106 |
T |
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| Q |
159 |
acatgaacaaaggcattgagttttcagtttcaagtttatcaatggttccaggaatcccaagcaagcctatacttgcaaagtatatactatttcatatatt |
258 |
Q |
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| T |
31786107 |
a--tgaacaaaggcattgagttttcagtttcaagtttatcaatggttccaggaatcccaatcaagcctatgcttgcaaagtatatactatttcatatata |
31786204 |
T |
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| Q |
259 |
ggccc |
263 |
Q |
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||||| |
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| T |
31786205 |
ggccc |
31786209 |
T |
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