View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_70 (Length: 252)
Name: NF3342_high_70
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_70 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5719278 - 5719032
Alignment:
| Q |
1 |
tagctttgattcatgctggccaggtaccttcacctgttattttaaattaaaattcatgctttgtcactatctaactacaaatgaatgttgtgtnnnnnnn |
100 |
Q |
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| T |
5719278 |
tagctttgattcatgctggccaggtaccttcacctgttattttaaattaaaattcatgctttgtcactatctaactacaaatgaatgttgtgtaaaaaaa |
5719179 |
T |
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| Q |
101 |
nctactaatgaatacataaaaatatggttatttctatatatatctgtacaggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatca |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5719178 |
actactaatgaatacataaaaatatggttatttttatatatatctgtacaggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatca |
5719079 |
T |
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| Q |
201 |
atctccaacaagaggagggtgattggccccaacaggttcatctcagt |
247 |
Q |
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| T |
5719078 |
atctccaacaagaggagggtgattggccccaacaggttcatctcagt |
5719032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 247
Target Start/End: Complemental strand, 5687159 - 5686916
Alignment:
| Q |
3 |
gctttgattcatgctggccaggtaccttcacctgttattttaaattaaaattcatgctttgtcactatctaactacaaatgaatgttgtgtnnnnnnnnc |
102 |
Q |
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| T |
5687159 |
gctttgattcatgccggccaggtaccttcacctgtcattgtaaattaaaattcatgctttgttactatataactacaaatgaatgttgtgtaaaaaaa-c |
5687061 |
T |
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| Q |
103 |
tactaatgaatacataaaaatatggttatttctatatatatctgtacaggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaat |
202 |
Q |
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| T |
5687060 |
tactaatgaatacatataaatatggttatttctatatatatctgtacaggcggagagagaccctactcctcttcatcgtgctgtaaaattaatcatcaat |
5686961 |
T |
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| Q |
203 |
ctccaacaagaggagggtgattggccccaacaggttcatctcagt |
247 |
Q |
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| T |
5686960 |
ctccaacaagaggagggtgattggccccaacaggtttatctcagt |
5686916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 5666042 - 5665944
Alignment:
| Q |
147 |
tacaggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcatctca |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
5666042 |
tacaggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaactaaaggagggtgattggccccaacaggttcatctca |
5665944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 5666152 - 5666062
Alignment:
| Q |
3 |
gctttgattcatgctggccaggtaccttcacctgttattttaaattaaaattcatgctttgtcactatctaactacaaatgaatgttgtgt |
93 |
Q |
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| T |
5666152 |
gctttgattcatgccggccaggtaccttcgccgtttactgtaaattaaaattcatgcttttttactatctaactacaaatgaatgttgtgt |
5666062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 5652258 - 5652166
Alignment:
| Q |
149 |
caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcat |
241 |
Q |
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| T |
5652258 |
caggcggagatagacccaactactcttcatcgtgctgcaaaattaatcatcaattcccaattagaagagggtgactggccccaacaggttcat |
5652166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 5601497 - 5601589
Alignment:
| Q |
149 |
caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcat |
241 |
Q |
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| T |
5601497 |
caggcgaagatagaccctactcctcttcatcgtgctgcaaatttaattatcaattcgcaactagaagatggcggctggccccaacaggttcat |
5601589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 5639123 - 5639031
Alignment:
| Q |
149 |
caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcat |
241 |
Q |
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| T |
5639123 |
caggcgaagatagaccctactcctcttcatcgtgctgcaaatttaattatcaattcgcaactagaagatggcggctggccccaacaggttcat |
5639031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 166763 - 166857
Alignment:
| Q |
149 |
caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcatct |
243 |
Q |
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||||| ||||||||| ||||||||||||||||||||| |||||| |||||||| ||| || || || |||||||||||||||||||||| |
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| T |
166763 |
caggcagagagagaccctactcctcttcatcgtgctgcaaaattgctcatcaattcccagttggaagaaggcaattggccccaacaggttcatct |
166857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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