View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_77 (Length: 249)
Name: NF3342_high_77
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_77 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7344056 - 7343837
Alignment:
| Q |
1 |
aacaatggattaaacaaagatattggaactatggagaatttggccctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaa |
100 |
Q |
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| T |
7344056 |
aacactggattaaacaaagatattggaactatggagaatttggccctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaa |
7343957 |
T |
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| Q |
101 |
gataatttcattgtccaaaagaggatgctgatgatacttcccatagnnnnnnnttataattttattaataagaataaagtatcaaatcatcaaataactt |
200 |
Q |
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| T |
7343956 |
gataatttcattgtccaaaagaggatgctgatgatacttcccatag-aaaaaattataattttattaataagaataaagtatcaaatcatcaaataactt |
7343858 |
T |
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| Q |
201 |
gaatgattttggtttaacctt |
221 |
Q |
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| T |
7343857 |
gaatgattttggtttaacctt |
7343837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11664440 - 11664663
Alignment:
| Q |
1 |
aacaatggattaaacaaagatattggaactatggagaatttggccctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaa |
100 |
Q |
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| T |
11664440 |
aacaatggattaaacaaaaatattggaattgtggagaatttggccctccctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaa |
11664539 |
T |
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| Q |
101 |
gataatttcattgtccaaaagaggatgctgatgatacttcccata-gnnnnnnnttataattttattaataagaataaag---tatcaaatcatcaaata |
196 |
Q |
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| T |
11664540 |
gataattttattgtcctaaagagcacgcaaatgatactt-caatatgaaaaaatttataattttattgataagaataaagtaatatcaaatcatcaaata |
11664638 |
T |
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| Q |
197 |
acttgaatgattttggtttaacctt |
221 |
Q |
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| T |
11664639 |
aatggaatgattttggtttaacctt |
11664663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 11669796 - 11669860
Alignment:
| Q |
46 |
ctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttca |
110 |
Q |
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| T |
11669796 |
ctccctagcatgagttgcacaagtggtgttgatggagaaggagttgtttgcaggagataatttca |
11669860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 11656014 - 11656090
Alignment:
| Q |
32 |
tggagaatttggccctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaagataattt |
108 |
Q |
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| T |
11656014 |
tggagaatttgagtctccctagcatgagttgtacaagtggaattgatgggcaaggagttgtatgcaggagataattt |
11656090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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