View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3342_high_8 (Length: 483)

Name: NF3342_high_8
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3342_high_8
NF3342_high_8
[»] chr7 (7 HSPs)
chr7 (125-468)||(33677290-33677633)
chr7 (178-304)||(24978714-24978840)
chr7 (172-357)||(27648189-27648374)
chr7 (179-269)||(25296834-25296924)
chr7 (13-62)||(33677691-33677740)
chr7 (177-266)||(6737518-6737606)
chr7 (283-342)||(7424743-7424803)
[»] chr4 (12 HSPs)
chr4 (179-355)||(4299366-4299544)
chr4 (177-342)||(41200188-41200353)
chr4 (175-342)||(31380326-31380492)
chr4 (187-293)||(21236378-21236484)
chr4 (195-264)||(19195633-19195705)
chr4 (183-272)||(14949621-14949710)
chr4 (178-241)||(25675784-25675847)
chr4 (194-269)||(48985513-48985588)
chr4 (182-219)||(4669582-4669619)
chr4 (188-269)||(48190688-48190769)
chr4 (202-258)||(6957307-6957363)
chr4 (177-209)||(38738852-38738884)
[»] chr1 (6 HSPs)
chr1 (177-342)||(21629804-21629969)
chr1 (197-311)||(51102962-51103076)
chr1 (195-269)||(32172993-32173067)
chr1 (195-269)||(50414570-50414643)
chr1 (195-269)||(51892125-51892198)
chr1 (178-221)||(39526109-39526152)
[»] chr2 (4 HSPs)
chr2 (188-311)||(12023748-12023871)
chr2 (172-261)||(38764268-38764357)
chr2 (175-223)||(21785165-21785212)
chr2 (187-241)||(18435258-18435312)
[»] chr3 (9 HSPs)
chr3 (179-294)||(6992043-6992157)
chr3 (195-342)||(34199093-34199239)
chr3 (172-304)||(10877090-10877221)
chr3 (174-229)||(16171638-16171693)
chr3 (179-231)||(35696472-35696524)
chr3 (181-219)||(28562154-28562192)
chr3 (178-214)||(5404377-5404413)
chr3 (199-311)||(21744950-21745062)
chr3 (178-222)||(27796932-27796976)
[»] chr5 (5 HSPs)
chr5 (178-263)||(22088107-22088192)
chr5 (195-269)||(11744191-11744265)
chr5 (182-220)||(28094136-28094174)
chr5 (177-272)||(24993279-24993374)
chr5 (179-272)||(5860885-5860976)
[»] chr8 (5 HSPs)
chr8 (177-269)||(31620741-31620833)
chr8 (195-263)||(13350229-13350297)
chr8 (176-210)||(26172725-26172759)
chr8 (179-220)||(8714864-8714905)
chr8 (195-311)||(13126297-13126413)
[»] chr6 (3 HSPs)
chr6 (176-264)||(24667005-24667092)
chr6 (197-342)||(22506269-22506414)
chr6 (177-264)||(23139392-23139477)


Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 125 - 468
Target Start/End: Complemental strand, 33677633 - 33677290
Alignment:
Q  125 ataaaatataaagaaatgtggaaatcattactaagaaaattaagatactatattaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaa 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33677633 ataaaatataaagaaatgtggaaatcattactaagaaaattaagatactatattaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaa 33677534  T
Q  225 gaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcgggctatacttacctcatagccgaactccggattaaaaggggcccttc 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33677533 gaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcgggctatacttacctcatagccgaactccggattaaaaggggcccttc 33677434  T
Q  325 ctctgggaaccggagggtagcacccaaaaaagagagaataagatactatattccatgtacatacaaacccaataatttaaacagggtattagaatagtat 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33677433 ctctgggaaccggagggtagcacccaaaaaagagagaataagatactatattccatgtacatacaaacccaataatttaaacagggtattagaatagtat 33677334  T
Q  425 cattctctgttgacttctgtgctacatgtgccctactggttttt 468  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  33677333 cattctctgttgacttctgtgctgcatgtgccctactggttttt 33677290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 178 - 304
Target Start/End: Original strand, 24978714 - 24978840
Alignment:
Q  178 taaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcg 277  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||  |||  || ||||||||| ||||||||||||| ||||||| |||| || | ||    
T  24978714 taaccaagtgattgggctcaagtggttaatgagttccaccaaaggacaaattgtttgggagaacgtgagttcgattcctaggtggaacaattcttggccg 24978813  T
Q  278 ggctatacttacctcatagccgaactc 304  Q
    || ||||||||||||| ||||||||||    
T  24978814 ggttatacttacctcaaagccgaactc 24978840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 357
Target Start/End: Complemental strand, 27648374 - 27648189
Alignment:
Q  172 ctatattaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttt 271  Q
    |||||| |||||||| |||||||||||| ||||||||||||  |||||||||  |||| ||||||||||  | | ||||||| | |||||||| |||| |    
T  27648374 ctatatcaaccaagtgattgggttcaagaggttaatgagctttaccaaaggacaaatcgttcgggagaatccaaattcgattac-gggtggaa-aattct 27648277  T
Q  272 tagtcgggctatacttacctcatagccgaactccggatta-aaaggggcccttcctctgggaaccggaggg-tagcacccaaaaaaga 357  Q
      | | ||||||||||||| ||  ||||||||||||||||  ||||   |||||| ||||||||||||||| || |||||||||||||    
T  27648276 cggccaggctatacttaccccacggccgaactccggattaccaaggcctccttcccctgggaaccggagggttaacacccaaaaaaga 27648189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 25296924 - 25296834
Alignment:
Q  179 aaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatt 269  Q
    ||||||| |||| || ||||||||||||||||||||||||||||| ||||| ||| |||||||  ||||| ||||||| ||||||| ||||    
T  25296924 aaccaagcaatttggctcaagtggttaatgagctccaccaaaggacgaatcgttcaggagaacttgagtttgattcctcggtggaacaatt 25296834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 33677740 - 33677691
Alignment:
Q  13 aatatgcctcggtgatttgattgtatcgcagtgtaattacagcatcttag 62  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33677740 aatatgcctcggtgatttgattgtatcgaagtgtaattacagcatcttag 33677691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 6737606 - 6737518
Alignment:
Q  177 ttaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaata 266  Q
    ||||||||| |||||||||||||||| ||||||| |||||||| | | ||||  ||  |||||||  ||||||||||| |||||||||||    
T  6737606 ttaaccaagcaattgggttcaagtggctaatgagttccaccaa-gaacgaattgtttaggagaacctgagttcgattcgtgggtggaata 6737518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 7424803 - 7424743
Alignment:
Q  283 tacttacctcatagccgaactccggattaaaaggggccctt-cctctgggaaccggagggt 342  Q
    ||||||||||  |||||||||| ||||||| |||| ||||| || ||||||||||||||||    
T  7424803 tacttacctcccagccgaactctggattaacagggcccctttcccctgggaaccggagggt 7424743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 355
Target Start/End: Original strand, 4299366 - 4299544
Alignment:
Q  179 aaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcgg 278  Q
    |||||||| |||||| |||||||||||||||||| |||||||||| |||||  |||||||||||||||||||||||||||||| || |||| |||| | |    
T  4299366 aaccaagtgattgggctcaagtggttaatgagcttcaccaaaggacgaatcgctcgggagaacgcgagttcgattcctgggtgtaacaattcttagccag 4299465  T
Q  279 gctatacttacctcatagccgaactccggattaaaaggg-gcccttcctctgggaaccggaggg-tagcacccaaaaaa 355  Q
    ||| ||||||||||   || |||| ||||||||  ||||  || |||| || |||||||||||| || |||||||||||    
T  4299466 gctttacttacctcgcggctgaacaccggattactagggctcctttcccctaggaaccggagggttaacacccaaaaaa 4299544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 177 - 342
Target Start/End: Original strand, 41200188 - 41200353
Alignment:
Q  177 ttaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtc 276  Q
    ||||||||| ||||  | |||||| |||||||||||||||||||||| |||||| ||||||||||  |||||||| || ||||||||| |||| || | |    
T  41200188 ttaaccaagcaattaagctcaagttgttaatgagctccaccaaaggacgaatca-tcgggagaacctgagttcgaatcttgggtggaacaattcttggcc 41200286  T
Q  277 gggctatacttacctcatagccgaactccggatta-aaaggggcccttcctctgggaaccggagggt 342  Q
       ||||||||||||||  ||| ||||||||||||  ||||  ||||||||| ||||||||||||||    
T  41200287 aaactatacttacctcaaggccaaactccggattaccaaggcccccttcctcagggaaccggagggt 41200353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 175 - 342
Target Start/End: Complemental strand, 31380492 - 31380326
Alignment:
Q  175 tattaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttag 274  Q
    ||||||||||  | ||||| |||  |||||||||||||||||||||||| ||||  ||| || ||||  ||||| |||||||| ||| || |||| || |    
T  31380492 tattaaccaatcatttgggctcagttggttaatgagctccaccaaaggacgaattgttcaggtgaact-gagtttgattcctgagtgaaacaattctttg 31380394  T
Q  275 tcgggctatacttacctcatagccgaactccggattaaaaggggcccttcctctgggaaccggagggt 342  Q
    |  ||||||||||||||||| |||||||||  |||||  |||||||||| | || ||||| |||||||    
T  31380393 ttaggctatacttacctcatggccgaactctagattatcaggggccctttccctaggaactggagggt 31380326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 293
Target Start/End: Complemental strand, 21236484 - 21236378
Alignment:
Q  187 aattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcgggctatact 286  Q
    ||||||| |||||| |||| |||||||||||||| || ||| | | | ||||||| ||||||||||| |||| |||||||||| || ||| | |||||||    
T  21236484 aattgggctcaagtagttactgagctccaccaaatgacgaaccgtacaggagaacccgagttcgatttctggatggaataattcttggtcagactatact 21236385  T
Q  287 tacctca 293  Q
    |||||||    
T  21236384 tacctca 21236378  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 19195705 - 19195633
Alignment:
Q  195 tcaagtggttaatgagctc---caccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaa 264  Q
    |||||||||||||||||||   ||||||| ||  |||| ||||||||||| ||||||||||||||||||||||    
T  19195705 tcaagtggttaatgagctcatccaccaaatgacaaatcgttcgggagaacccgagttcgattcctgggtggaa 19195633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 14949710 - 14949621
Alignment:
Q  183 aagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataattttt 272  Q
    |||| |||| ||||||||||||||||||||| | |||| || ||||| ||| ||||||| |||| ||||||| | | ||||| |||||||    
T  14949710 aagtgattgagttcaagtggttaatgagctctatcaaaagacgaatcgttcaggagaactcgaggtcgattcatagttggaacaattttt 14949621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 25675784 - 25675847
Alignment:
Q  178 taaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaac 241  Q
    ||||||||| |||||| |||| ||||||||||||||||   ||||| |||||||| ||||||||    
T  25675784 taaccaagtgattgggctcaattggttaatgagctccagttaaggatgaatcatttgggagaac 25675847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 48985588 - 48985513
Alignment:
Q  194 ttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatt 269  Q
    |||| ||||||||||||||| ||||||| | ||||||||||  |||||   |||||||||| ||||||||| ||||    
T  48985588 ttcacgtggttaatgagctctaccaaagaacgaatcattcgaaagaacctaagttcgattcatgggtggaacaatt 48985513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 4669582 - 4669619
Alignment:
Q  182 caagtaattgggttcaagtggttaatgagctccaccaa 219  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  4669582 caagcaattgggttcaagtggttaatgagttccaccaa 4669619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 48190688 - 48190769
Alignment:
Q  188 attgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatt 269  Q
    ||||| |||||||| |||||||||   ||| ||||  ||||| ||||||||||| |||||| ||||||| ||||||| ||||    
T  48190688 attggcttcaagtgattaatgagcattacctaaggccgaatcgttcgggagaacccgagtttgattcctaggtggaacaatt 48190769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 6957307 - 6957363
Alignment:
Q  202 gttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgg 258  Q
    ||||||||||||||||||||||  |||  ||||||| ||| | ||||||||||||||    
T  6957307 gttaatgagctccaccaaaggacaaattgttcgggataactcaagttcgattcctgg 6957363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 38738852 - 38738884
Alignment:
Q  177 ttaaccaagtaattgggttcaagtggttaatga 209  Q
    ||||| |||||||||||||||||||||||||||    
T  38738852 ttaacgaagtaattgggttcaagtggttaatga 38738884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 342
Target Start/End: Original strand, 21629804 - 21629969
Alignment:
Q  177 ttaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtc 276  Q
    |||||||||| |||  |||||||||||||||||| |||||||||||| ||| ||||||||| ||| |||||| ||||| | ||||||| ||||||| |||    
T  21629804 ttaaccaagtgattaagttcaagtggttaatgagttccaccaaaggacgaaacattcgggataacccgagtttgattcataggtggaacaatttttggtc 21629903  T
Q  277 gggctatacttacctcatagccgaactccggattaaaaggggcccttcctctgggaaccggagggt 342  Q
      ||||||||||||||| || | | ||| ||||||  |||| |||||||  | |||||||||||||    
T  21629904 aagctatacttacctcacagaccatctctggattaccagggccccttccattaggaaccggagggt 21629969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 311
Target Start/End: Original strand, 51102962 - 51103076
Alignment:
Q  197 aagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcgggctatacttacctcatag 296  Q
    ||||| |||||||||||||| |||| | |||||||||| |||||| |  ||| ||||| ||||||||| |||| |||| | | |||||||||||||| ||    
T  51102962 aagtgattaatgagctccactaaagaacgaatcattcgtgagaacccatgtttgattcatgggtggaacaattcttagccagactatacttacctcacag 51103061  T
Q  297 ccgaactccggatta 311  Q
    || ||||||| ||||    
T  51103062 ccaaactccgaatta 51103076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 32173067 - 32172993
Alignment:
Q  195 tcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatt 269  Q
    |||||||||||||||||||| |||||||| |||||  ||||| | || ||| || |||||||| |||||||||||    
T  32173067 tcaagtggttaatgagctccgccaaaggacgaatcgatcgggggtacccgatttggattcctgagtggaataatt 32172993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 50414643 - 50414570
Alignment:
Q  195 tcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatt 269  Q
    ||||||||| ||||||||||||||||| | ||||  ||| ||||||| ||||||| |||||||||||||| ||||    
T  50414643 tcaagtggtcaatgagctccaccaaag-acgaattgttcaggagaacccgagttcaattcctgggtggaacaatt 50414570  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 51892125 - 51892198
Alignment:
Q  195 tcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatt 269  Q
    ||||| ||||||||||||||||||||| | ||||| ||||||||||| |||  ||||||||| ||||||| ||||    
T  51892125 tcaagcggttaatgagctccaccaaagcacgaatcgttcgggagaac-cgaagtcgattcctaggtggaaaaatt 51892198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 39526109 - 39526152
Alignment:
Q  178 taaccaagtaattgggttcaagtggttaatgagctccaccaaag 221  Q
    |||||||| ||||||| |||||||| ||||||||||||||||||    
T  39526109 taaccaagcaattgggctcaagtggctaatgagctccaccaaag 39526152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 188 - 311
Target Start/End: Complemental strand, 12023871 - 12023748
Alignment:
Q  188 attgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcgggctatactt 287  Q
    |||||| ||||||  |||||||||||| |||||||| ||||  |||||||| || |||||||||||||||||||||| |||| || ||| |||| |||||    
T  12023871 attgggctcaagttattaatgagctcctccaaaggacgaattgttcgggaggacccgagttcgattcctgggtggaacaattcttggtcaggctgtactt 12023772  T
Q  288 acctcatagccgaactccggatta 311  Q
    |||||||  ||||||||| |||||    
T  12023771 acctcatgaccgaactccagatta 12023748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 38764357 - 38764268
Alignment:
Q  172 ctatattaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtg 261  Q
    ||||||||| ||| | |||| | ||||||||||||||||||||||| || || |||| |||||||||||| ||| |||||||| ||||||    
T  38764357 ctatattaatcaactgattgagctcaagtggttaatgagctccacccaaagatgaataattcgggagaacccgaattcgattcttgggtg 38764268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 21785165 - 21785212
Alignment:
Q  175 tattaaccaagtaattgggttcaagtggttaatgagctccaccaaagga 223  Q
    |||||||||| | |||||| |||||||||||||||||||||||||||||    
T  21785165 tattaaccaa-tgattgggctcaagtggttaatgagctccaccaaagga 21785212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 18435312 - 18435258
Alignment:
Q  187 aattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaac 241  Q
    ||||| ||||||||| |||||||||||||| ||| || ||||||||||| |||||    
T  18435312 aattgagttcaagtgcttaatgagctccacgaaatgatgaatcattcggtagaac 18435258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 6992043 - 6992157
Alignment:
Q  179 aaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcgg 278  Q
    |||||||| ||| || |||||||| ||||||||| |||||||||| ||||  ||| ||||||| |||||||||||||||||||||| |||| ||     |    
T  6992043 aaccaagtgattaggctcaagtggataatgagcttcaccaaaggacgaattgttccggagaac-cgagttcgattcctgggtggaacaattcttgactag 6992141  T
Q  279 gctatacttacctcat 294  Q
    ||||||||||||||||    
T  6992142 gctatacttacctcat 6992157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 342
Target Start/End: Complemental strand, 34199239 - 34199093
Alignment:
Q  195 tcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcgggctatacttacctcat 294  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| ||| ||||||||||| |||||| |||| || | | || | ||||||||||      
T  34199239 tcaagtagttaatgagctccaccaaaggacgaatcgtttgggagaactcga-ttcgattcctgtgtggaacaattcttggccaggatttacttacctccc 34199141  T
Q  295 agccgaactccggattaaaaggggcccttcctctgggaaccggagggt 342  Q
     ||||||||| |||| |  |||| ||||||| |  |||||||||||||    
T  34199140 ggccgaactctggatcactagggccccttccccaaggaaccggagggt 34199093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 172 - 304
Target Start/End: Original strand, 10877090 - 10877221
Alignment:
Q  172 ctatattaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttt 271  Q
    |||| ||||||||| ||||| |||||||||||||||||||| ||||  |||| ||||| || ||||||||  |||||||||||||  || ||| |||| |    
T  10877090 ctattttaaccaagcaattgagttcaagtggttaatgagcttcacc-gaggacgaatcgtttgggagaacctgagttcgattcctatgtagaacaattct 10877188  T
Q  272 tagtcgggctatacttacctcatagccgaactc 304  Q
    | | | | |||| |||||||||| |||||||||    
T  10877189 tggccagactatccttacctcatggccgaactc 10877221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 16171638 - 16171693
Alignment:
Q  174 atattaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatc 229  Q
    |||| ||||||||||||||| |||||||| |||||||| |||||||||||||||||    
T  16171638 atataaaccaagtaattgggctcaagtgggtaatgagccccaccaaaggaagaatc 16171693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 35696472 - 35696524
Alignment:
Q  179 aaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcat 231  Q
    |||||||| |||||| |||||||||||||||||||||||||| || |||||||    
T  35696472 aaccaagtgattgggctcaagtggttaatgagctccaccaaaagacgaatcat 35696524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 28562192 - 28562154
Alignment:
Q  181 ccaagtaattgggttcaagtggttaatgagctccaccaa 219  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  28562192 ccaagtaattggactcaagtggttaatgagctccaccaa 28562154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 5404377 - 5404413
Alignment:
Q  178 taaccaagtaattgggttcaagtggttaatgagctcc 214  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  5404377 taaccaagtgattgggctcaagtggttaatgagctcc 5404413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 21745062 - 21744950
Alignment:
Q  199 gtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcgggctatacttacctcatagcc 298  Q
    ||||||||||||||||||| || ||  ||||  | |||||||| |||||| |||||| | |||||| |||| || | | | ||||||| ||||||| |||    
T  21745062 gtggttaatgagctccacctaatgataaatcgattgggagaacccgagtttgattcccgtgtggaacaattcttggccagactatactaacctcatggcc 21744963  T
Q  299 gaactccggatta 311  Q
     |||||| |||||    
T  21744962 aaactccagatta 21744950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 27796976 - 27796932
Alignment:
Q  178 taaccaagtaattgggttcaagtggttaatgagctccaccaaagg 222  Q
    ||||||||| |||| | ||||||||||||||||||||||| ||||    
T  27796976 taaccaagtgattgagctcaagtggttaatgagctccacctaagg 27796932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 263
Target Start/End: Original strand, 22088107 - 22088192
Alignment:
Q  178 taaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtgga 263  Q
    ||||||||| ||| |  |||||||||||||||||||| ||||||||  |||| ||||||| ||| |||||| ||||| ||||||||    
T  22088107 taaccaagtgattagactcaagtggttaatgagctcccccaaaggacaaatccttcgggaaaacccgagtttgattcttgggtgga 22088192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 11744265 - 11744191
Alignment:
Q  195 tcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatt 269  Q
    |||||||||||||||| ||||||||||||  |||| |||| |||||| |||||| ||||| || |||||| ||||    
T  11744265 tcaagtggttaatgagttccaccaaaggacaaatcgttcgtgagaacccgagtttgattcttgagtggaacaatt 11744191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 28094136 - 28094174
Alignment:
Q  182 caagtaattgggttcaagtggttaatgagctccaccaaa 220  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  28094136 caagtaattgggctcaagtggttaatgagctccaccaaa 28094174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 24993279 - 24993374
Alignment:
Q  177 ttaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataattttt 272  Q
    |||||||||| |||||  |||||||||||||||||||  || ||| | ||||  ||||||||||| |||||  ||||||| |||| || |||||||    
T  24993279 ttaaccaagtgattggtctcaagtggttaatgagctctccctaagaacgaatggttcgggagaacccgagtgtgattcctaggtgaaacaattttt 24993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 5860976 - 5860885
Alignment:
Q  179 aaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataattttt 272  Q
    ||||||| || ||||||||||||| |||||||||||| | ||||| || |  ||| |||||||  |||||||||| |||||||||| |||||||    
T  5860976 aaccaagcaactgggttcaagtgg-taatgagctcca-ctaaggatgagttgttcaggagaacctgagttcgatttctgggtggaagaattttt 5860885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 31620741 - 31620833
Alignment:
Q  177 ttaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatt 269  Q
    |||||||||| |||| | ||||||||||||| |||| |||||||||| |||| ||| |||||||| ||| || ||||||| ||| ||| ||||    
T  31620741 ttaaccaagtgattgtgctcaagtggttaattagcttcaccaaaggatgaattatttgggagaacccgaatttgattcctaggtagaacaatt 31620833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 13350229 - 13350297
Alignment:
Q  195 tcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtgga 263  Q
    ||||||||||||||| |||||||||| || ||| |  |||||||||| | |||| ||||||||||||||    
T  13350229 tcaagtggttaatgaactccaccaaaagacgaaccgctcgggagaaccctagtttgattcctgggtgga 13350297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 26172725 - 26172759
Alignment:
Q  176 attaaccaagtaattgggttcaagtggttaatgag 210  Q
    |||||||||||||||| ||||||||||||||||||    
T  26172725 attaaccaagtaattgagttcaagtggttaatgag 26172759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 8714905 - 8714864
Alignment:
Q  179 aaccaagtaattgggttcaagtggttaatgagctccaccaaa 220  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||    
T  8714905 aaccaagtaattgagttcaagtggttaataagctctaccaaa 8714864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 13126413 - 13126297
Alignment:
Q  195 tcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcgggctatacttacctcat 294  Q
    |||||||||||||||| | |||||||||| | ||| |||| |||||| | | || |||||||| | |||| ||||||| |||   | |||| |||||||     
T  13126413 tcaagtggttaatgagtttcaccaaaggacgtatcgttcgagagaacccaaatttgattcctgtgcggaacaatttttggtcaaaccatacatacctcac 13126314  T
Q  295 agccgaactccggatta 311  Q
    | ||||||||| |||||    
T  13126313 acccgaactccagatta 13126297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 24667005 - 24667092
Alignment:
Q  176 attaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaa 264  Q
    |||||||||||||||||| |||||||||||||||| |  | ||||||| ||||  ||| |||||||  |||||| |||| |||||||||    
T  24667005 attaaccaagtaattgggctcaagtggttaatgagtttta-caaaggacgaattgttcaggagaacctgagttcaattcttgggtggaa 24667092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 342
Target Start/End: Original strand, 22506269 - 22506414
Alignment:
Q  197 aagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcgggctatacttacctcatag 296  Q
    ||||||||||||| || |||||| | | ||||  || |||||||  |||||||||||||| | ||||| |||| || | | | |||| |||||||||  |    
T  22506269 aagtggttaatgaacttcaccaacg-atgaattgtttgggagaagccgagttcgattcctagttggaacaattattggccagactatccttacctcactg 22506367  T
Q  297 ccgaactccggattaaaaggggccc-ttcctctgggaaccggagggt 342  Q
    ||||||||||| |||  |||| ||| |||| ||||||||||||||||    
T  22506368 ccgaactccgggttactagggaccctttccactgggaaccggagggt 22506414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 23139477 - 23139392
Alignment:
Q  177 ttaaccaagtaattgggttcaagtggttaatgagctccaccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaa 264  Q
    |||||| |||||||||| |||||| ||||||||||||| ||  |||| ||||  ||| ||||||| |  |||| ||||||||||||||    
T  23139477 ttaacctagtaattggggtcaagtagttaatgagctccccc--aggaggaattgttcaggagaacccatgttcaattcctgggtggaa 23139392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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