View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_85 (Length: 242)
Name: NF3342_high_85
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_85 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 24991129 - 24991355
Alignment:
| Q |
17 |
ataatccgatagtagatgctcttggagttaatgcattattagatgtcgaatatgatgagttgcaaaatgatgttaaatcaaatgaatctccaaatgaaga |
116 |
Q |
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| T |
24991129 |
ataatccgatagtagatgctcttggagttaatgcattattagatgtcgaatatgatgagttgcaaaatgatgttaaatcaaatgaatctccaaatgaaga |
24991228 |
T |
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| Q |
117 |
agcataaaatttttagagtc-ttttgaaagatacaaataaatcattgtttgaaggatcttcgaactcaaagtcaacaatgtgtgttagacatttatgtat |
215 |
Q |
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| T |
24991229 |
agcataaattttttagagtctttttgaaagatacaattaaatcattgtttgaaggatcttcgaactcaaagtcaacaatgtgtgttagacatttatgtat |
24991328 |
T |
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| Q |
216 |
gaattctcaatttcatgtttttgaatt |
242 |
Q |
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| T |
24991329 |
gaattctcaatttcatgtttttgaatt |
24991355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 20625962 - 20626011
Alignment:
| Q |
26 |
tagtagatgctcttggagttaatgcattattagatgtcgaatatgatgag |
75 |
Q |
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| T |
20625962 |
tagtaaatgctcttggagttaatgcatgattagatgctgaatatgatgag |
20626011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 31391980 - 31391840
Alignment:
| Q |
24 |
gatagtagatgctcttggagttaatgcattattagatgtcgaatatgatgagttgcaaaatgatgttaaatcaaatgaatctccaaatgaagaagcataa |
123 |
Q |
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| T |
31391980 |
gatagtggatgctcttggagttaatgctggattagatgctgaatatgatgaggtgcaggatgatgtcgaggtagatgaacccccaaatgaagaggcccag |
31391881 |
T |
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| Q |
124 |
aatttttagagtcttttgaaagatacaaataaatcattgtt |
164 |
Q |
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| T |
31391880 |
aaattttataatattttgaaagaaacaaataaaccattgtt |
31391840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 41074732 - 41074872
Alignment:
| Q |
24 |
gatagtagatgctcttggagttaatgcattattagatgtcgaatatgatgagttgcaaaatgatgttaaatcaaatgaatctccaaatgaagaagcataa |
123 |
Q |
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| T |
41074732 |
gatagtggatgctcttggagttaatgctggattagatgctgaatatgatgaggtgcaggatgatgtcgaggtagatgaacccccaaatgaagaggcccat |
41074831 |
T |
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| Q |
124 |
aatttttagagtcttttgaaagatacaaataaatcattgtt |
164 |
Q |
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| T |
41074832 |
aaattttataatattttgaaagaaacaaataaaccattgtt |
41074872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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