View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3342_high_88 (Length: 241)

Name: NF3342_high_88
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3342_high_88
NF3342_high_88
[»] chr1 (3 HSPs)
chr1 (18-230)||(34158839-34159052)
chr1 (27-173)||(27905642-27905784)
chr1 (83-181)||(38544437-38544535)
[»] chr6 (2 HSPs)
chr6 (24-120)||(34101407-34101503)
chr6 (151-192)||(17278172-17278213)
[»] chr4 (1 HSPs)
chr4 (151-196)||(19814924-19814969)
[»] chr7 (1 HSPs)
chr7 (83-209)||(23983506-23983632)
[»] chr2 (3 HSPs)
chr2 (151-197)||(16952049-16952095)
chr2 (151-197)||(17022714-17022760)
chr2 (86-118)||(23650529-23650561)
[»] chr3 (2 HSPs)
chr3 (151-211)||(13017979-13018038)
chr3 (148-209)||(40689424-40689485)
[»] scaffold1613 (1 HSPs)
scaffold1613 (83-181)||(716-814)
[»] chr8 (1 HSPs)
chr8 (133-192)||(1760960-1761018)
[»] chr5 (1 HSPs)
chr5 (151-192)||(24071971-24072012)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 34158839 - 34159052
Alignment:
Q  18 gatagatggttatgaatatcgttttcaatggttgtttgtgatggagtctgattttggt-gtgaggttttattttggtggttattgtcctcataggtgttg 116  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34158839 gatagatggttatgaacatcgttttcaatggttgtttgtgacggagtctgattttggtagtgaggttttattttggtggttattgtcctcataggtgttg 34158938  T
Q  117 aaggtatgtgtgtttgaggtgttgttcgtatggatgtcttttatgatgtttatttttgggtgttctgtctatatacaacgtttttaatttgtagttttta 216  Q
    |||  |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||    
T  34158939 aagacatgtgtgtttgaggtgttgtgcgtatgaatgtcttttatgatgtttatttttaggtgttttgtctatatacaacgtttttaatttgtagtttcta 34159038  T
Q  217 attcgttggtctct 230  Q
    ||||||||||||||    
T  34159039 attcgttggtctct 34159052  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 27905642 - 27905784
Alignment:
Q  27 ttatgaatatcgttttcaatggttgtttgtgatggagtctgattttggtg-tgaggttttattttggtggttattgtcctcataggtgttgaaggtatgt 125  Q
    ||||| |||||||||| | |||| |||||  | | ||||||||||||||| |||||||| |||||||||||||||||| | |  |||||||||| ||       
T  27905642 ttatggatatcgtttttagtggtggtttgcaacgaagtctgattttggtggtgaggttt-attttggtggttattgtctttaagggtgttgaagtta--- 27905737  T
Q  126 gtgtttgaggtgttgttcgtatggatgtcttttatgatgtttattttt 173  Q
    | |||| |||||||||  |||||| ||||||||||| |||||||||||    
T  27905738 gggttt-aggtgttgtctgtatgggtgtcttttatggtgtttattttt 27905784  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 38544535 - 38544437
Alignment:
Q  83 tttattttggtggttattgtcctcataggtgttgaaggtatg-tgtgtttgaggtgttgttcgtatggatgtcttttatgatgtttatttttgggtgttc 181  Q
    ||||||||||||  | |||||||||| ||||||||||||| | | ||  | |||||||||  ||| |||||||||||||| |||||||||| ||||||||    
T  38544535 tttattttggtgtatgttgtcctcatgggtgttgaaggtacgatttggct-aggtgttgtgtgtagggatgtcttttatggtgtttattttcgggtgttc 38544437  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 34101407 - 34101503
Alignment:
Q  24 tggttatgaatatcgttttcaatggttgtttgtgatggagtctgattttggtgtgaggttttattttggtggttattgtcctcataggtgttgaagg 120  Q
    |||||||| |||||||||| || ||| |||||  | |||||||| ||||||||  | | ||||| |||||||||||||||||||| |||||||||||    
T  34101407 tggttatggatatcgtttttaacggtggtttgcaacggagtctggttttggtggtaaggtttatattggtggttattgtcctcatgggtgttgaagg 34101503  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 17278213 - 17278172
Alignment:
Q  151 tgtcttttatgatgtttatttttgggtgttctgtctatatac 192  Q
    |||||||||||||||||||||| |||||||| | ||||||||    
T  17278213 tgtcttttatgatgtttattttcgggtgttccgcctatatac 17278172  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 19814969 - 19814924
Alignment:
Q  151 tgtcttttatgatgtttatttttgggtgttctgtctatatacaacg 196  Q
    |||||||||||||||||||||||||||||||||  |||||||||||    
T  19814969 tgtcttttatgatgtttatttttgggtgttctgcttatatacaacg 19814924  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 209
Target Start/End: Original strand, 23983506 - 23983632
Alignment:
Q  83 tttattttggtggttattgtcctcataggtgttgaaggtatg-tgtgtttgaggtgttgttcgtatggatgtcttttatgatgtttatttttgggtgttc 181  Q
    ||||||||||||| | ||||||||||  |||||||||||| | | ||  | |||||||||  ||| |||||||||||||||||||||||||||| || ||    
T  23983506 tttattttggtgggtgttgtcctcatgtgtgttgaaggtaaggtatgact-aggtgttgtgtgtagggatgtcttttatgatgtttatttttggatgctc 23983604  T
Q  182 tgtctatatacaacgtttttaatttgta 209  Q
     | |||||||| | |  |||||||||||    
T  23983605 cgcctatatacgatgcctttaatttgta 23983632  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 16952095 - 16952049
Alignment:
Q  151 tgtcttttatgatgtttatttttgggtgttctgtctatatacaacgt 197  Q
    ||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  16952095 tgtcttttatgatgtttatttttggatgttctgcctatatacgacgt 16952049  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 17022760 - 17022714
Alignment:
Q  151 tgtcttttatgatgtttatttttgggtgttctgtctatatacaacgt 197  Q
    ||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  17022760 tgtcttttatgatgtttatttttggatgttctgcctatatacgacgt 17022714  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 23650529 - 23650561
Alignment:
Q  86 attttggtggttattgtcctcataggtgttgaa 118  Q
    ||||||||||||||||||||||| |||||||||    
T  23650529 attttggtggttattgtcctcatgggtgttgaa 23650561  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 13018038 - 13017979
Alignment:
Q  151 tgtcttttatgatgtttatttttgggtgttctgtctatatacaacgtttttaatttgtagt 211  Q
    |||||||||||||||||||||| || ||||  ||||||||||||||  |||||||||||||    
T  13018038 tgtcttttatgatgtttatttt-ggatgtttcgtctatatacaacgcctttaatttgtagt 13017979  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 40689485 - 40689424
Alignment:
Q  148 ggatgtcttttatgatgtttatttttgggtgttctgtctatatacaacgtttttaatttgta 209  Q
    |||||||||||||||| ||||||||||||||||  |  ||||||||||  ||||| ||||||    
T  40689485 ggatgtcttttatgatatttatttttgggtgtttcgcttatatacaacacttttagtttgta 40689424  T

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Target: scaffold1613 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 814 - 716
Alignment:
Q  83 tttattttggtggttattgtcctcataggtgttgaaggtatg-tgtgtttgaggtgttgttcgtatggatgtcttttatgatgtttatttttgggtgttc 181  Q
    ||||||||||||  | |||||||||| ||||||||||||| | | ||  | |||||||||  ||| |||||||||||||| |||||||||| ||||||||    
T  814 tttattttggtgtatgttgtcctcatgggtgttgaaggtacgatttggct-aggtgttgtgtgtagggatgtcttttatggtgtttattttcgggtgttc 716  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 1760960 - 1761018
Alignment:
Q  133 aggtgttgttcgtatggatgtcttttatgatgtttatttttgggtgttctgtctatatac 192  Q
    ||||||||| |||||| ||||||||||||||||||| | |||||| ||| ||||||||||    
T  1760960 aggtgttgtgcgtatgaatgtcttttatgatgttta-tattgggttttccgtctatatac 1761018  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 24072012 - 24071971
Alignment:
Q  151 tgtcttttatgatgtttatttttgggtgttctgtctatatac 192  Q
    |||||||||||||||||||||| |||||||| | ||||||||    
T  24072012 tgtcttttatgatgtttattttcgggtgttccgcctatatac 24071971  T

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