View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_97 (Length: 235)
Name: NF3342_high_97
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_97 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40764852 - 40764629
Alignment:
| Q |
1 |
aaatcaattccccatgttacttcgttctcaaattccgtaccattcttcacagcttcgtccagtatttccacagcttctgtatatgtaagtcgaatgaagg |
100 |
Q |
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| T |
40764852 |
aaatcaattccccattttacttcattctcaaattccgtaccattcttcacagcttcttccagtatttccacagcttctgtatatgtaagtcgaatgaagg |
40764753 |
T |
|
| Q |
101 |
gggtggaggcaaccatttttaaacgatcaatgcaacctttgtcagccataaattccatatcctcaaggcagttgtcgagtaaccactgacacaaaaattt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40764752 |
gggtggaggcaaccattttcaaacgatcaatgcaacctttgtcagccataaattccatatcctcaaggcagttgtcgagtaaccactgacacaaaaattt |
40764653 |
T |
|
| Q |
201 |
cacatatacctcggcgcacttcat |
224 |
Q |
| |
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||||||| |||||||||||||||| |
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| T |
40764652 |
cacatatgcctcggcgcacttcat |
40764629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 42912475 - 42912249
Alignment:
| Q |
7 |
attccccatgttacttcgttctcaaattccgtaccattcttcacagcttcgtccagtatttccacagcttctgtatatgtaagtcgaatgaagggggtgg |
106 |
Q |
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||||||||| |||||| |||||||||| | ||||||||| ||||| ||| |||| ||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
42912475 |
attccccattctacttccttctcaaatttcttaccattctgcacagattcttccaatatttccacggcttctgtatatgtaagtcgaatgaagggggttg |
42912376 |
T |
|
| Q |
107 |
aggcaaccatttttaaacgatcaatgcaacct---------ttgtcagccataaattccatatcctcaaggcagttgtcgagtaaccactgacacaaaaa |
197 |
Q |
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||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
42912375 |
aggcaaccattttcaaacgatcaatgcaacctttatcaaacttgtcggccataaattccatatcctcaaggcagttgtcaagtaaccaccgacacaaaaa |
42912276 |
T |
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| Q |
198 |
tttcacatatacctcggcgcacttcat |
224 |
Q |
| |
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|||||||||| |||||||||||||||| |
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| T |
42912275 |
tttcacatatgcctcggcgcacttcat |
42912249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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