View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_high_98 (Length: 234)
Name: NF3342_high_98
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_high_98 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 31067647 - 31067863
Alignment:
| Q |
18 |
accataatgcttgtattattttggatattggaattcnnnnnnnggaaaataggtgtatgaagtgttagagtatccacaacggaatcatatatcttttggt |
117 |
Q |
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| T |
31067647 |
accataatgcttgtattattttggatattggaattctttttttggaaaataggtgtatgaagtgttagagcatccacaacggaatcatatatcttttggt |
31067746 |
T |
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| Q |
118 |
atttaagtacgacttacagcttatacattattcatttataattttctaacagttgtatctaataaatactcattttcttcaactcaacactttacacaaa |
217 |
Q |
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| T |
31067747 |
acttaagtacgacttacagcttatacattattcatttataattttctaacagttgtatctaataaatactcattttcttcaattcaacactttacacaaa |
31067846 |
T |
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| Q |
218 |
tttcgtaaacaaaattc |
234 |
Q |
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| T |
31067847 |
tttcgtaaacaaaattc |
31067863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 36656596 - 36656636
Alignment:
| Q |
149 |
tcatttataattttctaacagttgtatctaataaatactca |
189 |
Q |
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| T |
36656596 |
tcatttataattttttaatagtggtatctaataaatactca |
36656636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 4755293 - 4755370
Alignment:
| Q |
149 |
tcatttataattttctaacagttgtatctaataaatactcattttcttcaactcaacactttacacaaatttcgtaaa |
226 |
Q |
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| T |
4755293 |
tcatttataattttttaatattattatctaataaatactcaatttttccaactcaacacctcacacaaatttcttaaa |
4755370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 37073811 - 37073723
Alignment:
| Q |
139 |
tatacattattcatttataattttctaacagttgtatctaataaatactcattttcttcaactcaacactttacacaaatttcgtaaac |
227 |
Q |
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||||||| ||| |||||||||||| ||| | | |||||||||||| ||||| ||||| |||| |||||| | |||||||| || ||||| |
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| T |
37073811 |
tatacatcatttatttataattttttaatactagtatctaataaacactcaatttctgcaacccaacacctcacacaaatatcttaaac |
37073723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 8228903 - 8228863
Alignment:
| Q |
149 |
tcatttataattttctaacagttgtatctaataaatactca |
189 |
Q |
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| T |
8228903 |
tcatttataattttttaacaatagtatctaataaatactca |
8228863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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