View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3342_low_10 (Length: 468)
Name: NF3342_low_10
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 97 - 449
Target Start/End: Complemental strand, 28698309 - 28697957
Alignment:
| Q |
97 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccgaaggagacaactatttccaaagtcagaattggaaa |
196 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
28698309 |
gttggctcatagatagtggttgcacaaaccacatgacttatgatcgtgagctctttaaagatttggacaagacaactatttccaaagtcagaattggaaa |
28698210 |
T |
|
| Q |
197 |
tggcgcacttatcgaagtaaaaggcaaggtaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
296 |
Q |
| |
|
|| || |||||| |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28698209 |
tgacgtacttattgaagtaaaaggcaagggaacagttgcaattgaaagcctttcaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
28698110 |
T |
|
| Q |
297 |
caaaaccttttgagtgttactcaactgctagagaatgcttataaagtgttgtttgaggnnnnnnnntgtgtgattaaagatgcaagcaacatagaaatgg |
396 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
28698109 |
cataaccttttgagtgttactcaactgctagagaatggttataaggagttgtttgaggataaaaaatgtgtgattaaagatgcaaacaacatagaaatgg |
28698010 |
T |
|
| Q |
397 |
tcaatgttcaaatgaaaggcaagagctttgccttggatttgatgaatgaggaa |
449 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
28698009 |
tcaatgttcaaatgaaaggcaagagcttttccttggatttgataaatgaggaa |
28697957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28698494 - 28698405
Alignment:
| Q |
1 |
taaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtcagttaggacatgtggaaagaatatgcaaggc |
90 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28698494 |
taaccatccaccaaacagatgttggtggagaccagacgtaaaatgtcacaagtgtggtcagttaggacatgtggaaagaatatgcaaggc |
28698405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 97 - 449
Target Start/End: Original strand, 627280 - 627632
Alignment:
| Q |
97 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccgaaggagacaactatttccaaagtcagaattggaaa |
196 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||| | | |||||||||||||||| ||||||||||||||| |
|
|
| T |
627280 |
gttggctcatagatagtggttgcacaaaccacatgacttatgatcgtgagctctataaagatttggacgagacaactatttccagagtcagaattggaaa |
627379 |
T |
|
| Q |
197 |
tggcgcacttatcgaagtaaaaggcaaggtaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
296 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
627380 |
tggcgtacttattgaagtaaaaggcaagggaacagttgcaattgaatgcctttcaggtttgaaactaatttctgatgtcttatatgtttctaaaattaat |
627479 |
T |
|
| Q |
297 |
caaaaccttttgagtgttactcaactgctagagaatgcttataaagtgttgtttgaggnnnnnnnntgtgtgattaaagatgcaagcaacatagaaatgg |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||| ||| |||||||||| |
|
|
| T |
627480 |
caaaaccttttgagtgttactcaactgctagagaatggttataaggtgttgtttgaggataaaaaatgtgtgattacagatgcaaacaatatagaaatgg |
627579 |
T |
|
| Q |
397 |
tcaatgttcaaatgaaaggcaagagctttgccttggatttgatgaatgaggaa |
449 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
627580 |
tcaatgttcaaatgaaatgcaagagcttttccttggatttgatgaatgaggaa |
627632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 627095 - 627184
Alignment:
| Q |
1 |
taaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtcagttaggacatgtggaaagaatatgcaaggc |
90 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
627095 |
taaccatccaccaaacagatgttggtggagaccagacgtaaaatgtcacaagtgtggccagttaggacatgtggaaagaatatgcaaggc |
627184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 97 - 338
Target Start/End: Complemental strand, 33721097 - 33720856
Alignment:
| Q |
97 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccgaaggagacaactatttccaaagtcagaattggaaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
33721097 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccggacgagacaactatttccaaagtcagaattggaaa |
33720998 |
T |
|
| Q |
197 |
tggcgcacttatcgaagtaaaaggcaaggtaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33720997 |
tggcgcacttatcgaagtaaaaggcaagggaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
33720898 |
T |
|
| Q |
297 |
caaaaccttttgagtgttactcaactgctagagaatgcttat |
338 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
33720897 |
caaaaccttttgagtgttactcaaccgctagagaatggttat |
33720856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 335 - 449
Target Start/End: Complemental strand, 33716568 - 33716454
Alignment:
| Q |
335 |
ttataaagtgttgtttgaggnnnnnnnntgtgtgattaaagatgcaagcaacatagaaatggtcaatgttcaaatgaaaggcaagagctttgccttggat |
434 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33716568 |
ttataaagtgttgtttgaggataaaaaatgtgtgattaaagatgcaaacaacatacaaatggtcaatgttcaaatgaaaggcaagagctttgccttggat |
33716469 |
T |
|
| Q |
435 |
ttgatgaatgaggaa |
449 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33716468 |
ttgatgaatgaggaa |
33716454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33721282 - 33721193
Alignment:
| Q |
1 |
taaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtcagttaggacatgtggaaagaatatgcaaggc |
90 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33721282 |
taaccatccacaaaacagatattggtggagaccaaacgtaaaatgtcagaagtgttgtcagttaggacatgtggaaagaatatgcaaggc |
33721193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 31082293 - 31082343
Alignment:
| Q |
251 |
aggtttgaaactaatttctgatgtcttatatgttcctaaaattaatcaaaa |
301 |
Q |
| |
|
|||| ||||||| || |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
31082293 |
aggtctgaaacttatctctgatgttttatatgttcctgaaattaatcaaaa |
31082343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 9307516 - 9307566
Alignment:
| Q |
251 |
aggtttgaaactaatttctgatgtcttatatgttcctaaaattaatcaaaa |
301 |
Q |
| |
|
|||| ||||||| || |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
9307516 |
aggtctgaaacttatctctgatgttttatatgttcctgaaattaatcaaaa |
9307566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University