View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_103 (Length: 233)
Name: NF3342_low_103
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_103 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 13868061 - 13867832
Alignment:
| Q |
1 |
aattcaacaaccgttcctgccacagtgtgagatcagcaggatttatgaacatctccaacgcgtgcttggacgacttcagatcttgtgaataatttaagtt |
100 |
Q |
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| T |
13868061 |
aattcaacaaccgttcccgccacagtgtgagatcagcaggatttatgaacatctccaaggcctgcttcgacgacttcagatcttgtgaataatttaagtt |
13867962 |
T |
|
| Q |
101 |
tttgaaccctgggaatccaatcctacgatccttcatgaaaacgcggagacaatccggtatggtagctgcatgagcgagctggaaaatgaggcagcgatga |
200 |
Q |
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| T |
13867961 |
tttgaaccctgggaatccaatcctacgatccttcatgaaaacacggagacaatccggtgtggtagctgcatgagcgagctggaaactgaggcagcgatga |
13867862 |
T |
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| Q |
201 |
ccaacacagaactgcaatgtgatgatgtcc |
230 |
Q |
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| T |
13867861 |
ccaacacagaactgcaacgtgtttatgtcc |
13867832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 11876254 - 11876447
Alignment:
| Q |
28 |
tgagatcagcaggatttatgaacatctccaacgcgtgcttggacgacttcagatcttgtgaataatttaagtttttgaaccctgggaatccaatcctacg |
127 |
Q |
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| T |
11876254 |
tgagatcagcaagacttatgtacatctccaacgcgtgcttcgacgacctcaaatcttgcaaataagttttgttattgaaacctgggaatccaatcatacg |
11876353 |
T |
|
| Q |
128 |
atccttcatgaaaacgcggagacaatccggtatggtagctgcatgagcgagctggaaaatgaggcagcgatgaccaacacagaactgcaatgtg |
221 |
Q |
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| T |
11876354 |
atccttcatgaaatcacgaaaaatttgtggtatggtatctgcgcgagcgagctggaaaatgaggcagcggtcagcaagggagaactgcaatgtg |
11876447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 11885896 - 11885732
Alignment:
| Q |
49 |
acatctccaacgcgtgcttggacgacttcagatcttgtgaataatttaagtttttgaaccctgggaatccaatcctacgatccttcatgaaaacgcggag |
148 |
Q |
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|||||||||| | |||||| ||| | |||| || ||||||||| ||| ||| || |||||||||||||||||| ||||||||| ||||| | |||| |
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| T |
11885896 |
acatctccaatgtgtgcttcgaccaattcaaatattgtgaatacgttaggttcttcaaccctgggaatccaatcaaacgatcctttatgaactcacggat |
11885797 |
T |
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| Q |
149 |
acaatccggtatggtagctgcatgagcgagctggaaaatgaggcagcgatgaccaacacagaact |
213 |
Q |
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| T |
11885796 |
acaagtcggtatggtatttgtgcgattgagctggaaaatgttgcaatgatcaccaacacagaact |
11885732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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