View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_105 (Length: 230)
Name: NF3342_low_105
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_105 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 2074703 - 2074507
Alignment:
| Q |
20 |
ttgtacatataaaatagttaatttttcaataaatttgggcaagctcttacatggatagtcagttctagattgaattttatgcataaaaccaaataataaa |
119 |
Q |
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| T |
2074703 |
ttgtacatataaaatagttaatttttcaataaatttgtgcatgctcttacatgg--------ttctagattgaatttcatgcataaaaccaaataataaa |
2074612 |
T |
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| Q |
120 |
atgttgagtaaatggatggagaaaacaaattgttatgtcagtacgaaataaaattgcacaggaacaattgaccaagtcaattaaattgttttccaagaat |
219 |
Q |
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| T |
2074611 |
atggtgagtatatgaagggagaaaacaaattgttatgtcggtatgaaataaaattgcacaggaacaattgactaagtcaattaaattgttttccaagaat |
2074512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 2100592 - 2100396
Alignment:
| Q |
20 |
ttgtacatataaaatagttaatttttcaataaatttgggcaagctcttacatggatagtcagttctagattgaattttatgcataaaaccaaataataaa |
119 |
Q |
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| T |
2100592 |
ttgtacatataaaatagttaatttttcaataaatttgtgcaagctcttgcatgg--------ttctagattgaattttatgcataaaaccaaataataaa |
2100501 |
T |
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| Q |
120 |
atgttgagtaaatggatggagaaaacaaattgttatgtcagtacgaaataaaattgcacaggaacaattgaccaagtcaattaaattgttttccaagaat |
219 |
Q |
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| T |
2100500 |
atggtgagtatatgaagggagaaaacaaattgttatgtcggtatgaaataaaattgcacaagaacaattgactaagtcaattaaattgttttccaagaat |
2100401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 2140219 - 2140063
Alignment:
| Q |
20 |
ttgtacatataaaatagttaatttttcaataaatttgggcaagctcttacatggatagtcagttctagattgaa-ttttatgcataaaaccaaataataa |
118 |
Q |
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| T |
2140219 |
ttgtacataaaaaatagttaatttttgaataaatttgagcaagctctta-atggacagtcagttctagatttaagttttatgcatacaaccaaataataa |
2140121 |
T |
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| Q |
119 |
aa-tgttgagtaaatggatggagaaaacaaattgttatgtcagtacgaaataaaattg |
175 |
Q |
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| T |
2140120 |
aaatgttgagtaaatgaagggagaaaacaaattgttatgtcggtacgaaataaaattg |
2140063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 2059476 - 2059394
Alignment:
| Q |
67 |
tacatggatagtcagttctagattgaattttatgcataaaaccaaataataaaatgttgagtaaatggatggagaaaacaaat |
149 |
Q |
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| T |
2059476 |
tacatggatagtcagttctagattgaattttatgcatacaaccaaataataaaatgttgagtatatgaagggagaaaacaaat |
2059394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 2115563 - 2115406
Alignment:
| Q |
73 |
gatagtcagttctagattgaa--ttttatgcataaaaccaaataataaaatgttgagtaaatggatggagaaaacaaattgttatgtcagtacgaaataa |
170 |
Q |
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|||||||||||||||||| || ||||||||||| |||||||||||||||| ||||||| ||| | || ||||||||||||| | | | |||||||||| |
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| T |
2115563 |
gatagtcagttctagattaaagtttttatgcatacaaccaaataataaaatattgagtatatgaaagggaaaaacaaattgttgtct-aatacgaaataa |
2115465 |
T |
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| Q |
171 |
aattgcacaggaacaattgaccaagtca----attaaattgttttccaagaatgcaagt |
225 |
Q |
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||||||||||||| ||||||| |||||| ||||||||||||||||| | ||||||| |
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| T |
2115464 |
aattgcacaggaataattgactaagtcaaaatattaaattgttttccaaaattgcaagt |
2115406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 225
Target Start/End: Original strand, 2690211 - 2690347
Alignment:
| Q |
94 |
ttttatgcataaaaccaaataataaaatgttgagtaaatggatggagaaaacaaattgttatgtc-agtacgaaataaaattgcacaggaacaattgacc |
192 |
Q |
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||||||||||| |||||||||||||||||||||||||||| | ||||||||||||| | |||| | || |||||||||||||||||||||||||| | |
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| T |
2690211 |
ttttatgcatacaaccaaataataaaatgttgagtaaatgaaaggagaaaacaaatcactgtgtcgaataagaaataaaattgcacaggaacaattgtct |
2690310 |
T |
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| Q |
193 |
aagtca----attaaattgttttccaagaatgcaagt |
225 |
Q |
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||||| ||||||||||||||||| ||||||||| |
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| T |
2690311 |
cagtcaaaatattaaattgttttccaaaaatgcaagt |
2690347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 2244000 - 2244073
Alignment:
| Q |
47 |
aataaatttgggcaagctcttacatggatagtcagttctagattgaattttatgcataaaaccaaataataaaa |
120 |
Q |
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| T |
2244000 |
aataaaattgtgcaagcttttacatggatagtcagttctagattgacttttatgcatacaaccaaataagaaaa |
2244073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 2127755 - 2127671
Alignment:
| Q |
44 |
ttcaataaatttgggcaagctcttacatggatagtcagttctagattgaattt-tatgcataaaaccaaataataaaatgttgag |
127 |
Q |
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||||||| |||| ||||||||||| ||||||| ||||||||||||| || || |||||||| |||||||||||||||||||||| |
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| T |
2127755 |
ttcaatatttttgtgcaagctcttaaatggatactcagttctagattaaagttctatgcatacaaccaaataataaaatgttgag |
2127671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 2136861 - 2136810
Alignment:
| Q |
42 |
ttttcaataaatttgggcaagctcttacatggatagtcagttctagattgaa |
93 |
Q |
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| T |
2136861 |
ttttcaataaatttgtgcaagctcttacatggacagtcagttctagattgaa |
2136810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 2067781 - 2067697
Alignment:
| Q |
44 |
ttcaataaatttgggcaagctcttacatggatagtcagttctagattgaattt-tatgcataaaaccaaataataaaatgttgag |
127 |
Q |
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||||||| |||| ||||||||||| |||||| ||||||||||||| || || |||||||| |||||||||||||||||||||| |
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| T |
2067781 |
ttcaatatttttgtgcaagctcttaagtggatactcagttctagattaaagttctatgcatacaaccaaataataaaatgttgag |
2067697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 2136811 - 2136779
Alignment:
| Q |
193 |
aagtcaattaaattgttttccaagaatgcaagt |
225 |
Q |
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| T |
2136811 |
aagtcaattaaattgttttccaagaatgcaagt |
2136779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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