View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_112 (Length: 219)
Name: NF3342_low_112
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_112 |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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| [»] scaffold0098 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 2626466 - 2626248
Alignment:
| Q |
2 |
aaggtgatcccaccaaaaatgagtagtgagttctaagccaataccaactaacttatcagcacaatggttcccatctctataaatatgagaaacaataaaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2626466 |
aaggtgatcccaccaaaaatgagtagtgagttctaagccaatgccaactaacttatcagcacaatggttctcatctctataaatatgagaaacaataaaa |
2626367 |
T |
|
| Q |
102 |
gacattgaggagagtaaatgtaaacagttatcccacctattccttaagtgccaaggcacaatgga-ttagacttgaaagccaaagtgactaacattgagc |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2626366 |
ggcattgaggagagtaaatgtaaacagttatcccacctattccttaagtgccaaggcacaatggatttagacttgaaagccaaagtgactaacattgagc |
2626267 |
T |
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| Q |
201 |
ctgtttcaatccataagtg |
219 |
Q |
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||||||||||||||||||| |
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| T |
2626266 |
ctgtttcaatccataagtg |
2626248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 8295031 - 8295131
Alignment:
| Q |
57 |
tcagcacaatggttcccatctctataaatatgagaaacaataaaagacattgaggagagtaaatgtaaacagttatcccacctattccttaagtgccaag |
156 |
Q |
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||||||||||| || || || ||||||||||||| |||| ||||||||| |||||| | ||| ||||| || | ||| ||||| ||||||||||||| |
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| T |
8295031 |
tcagcacaatgattaccttccctataaatatgagttacaaaaaaagacatagaggagcagagatgaaaacaattttgccatctatttcttaagtgccaag |
8295130 |
T |
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| Q |
157 |
g |
157 |
Q |
| |
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| |
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| T |
8295131 |
g |
8295131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 18285877 - 18285671
Alignment:
| Q |
8 |
atcccaccaaaaatgagtagtgagttctaagccaataccaactaacttatcagcacaatggttcccatctctataaatatgagaaacaataaaagacatt |
107 |
Q |
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|||||||||||||| || | |||||||| ||||| | ||| | ||||||||||||||| || || |||||||||||||||| ||| |||||||||||| |
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| T |
18285877 |
atcccaccaaaaataagagctaagttctaaaccaatgctaacaagcttatcagcacaatgatttccttctctataaatatgagtaaccataaaagacatt |
18285778 |
T |
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| Q |
108 |
gaggagagtaaatgtaaacagttatcccacctattccttaagtgccaaggcacaatgga-ttagacttgaaagccaaagtgactaacattgagcctgttt |
206 |
Q |
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||||| | | ||||||||| || |||||| | || ||||||| ||||||||| ||||| || || || ||||| |||||||||||||| || ||||| |
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| T |
18285777 |
gaggaaatcagatgtaaacaattttcccacttgtttcttaagttccaaggcactatggattttgatttaaaagctaaagtgactaacatagaatttgttt |
18285678 |
T |
|
| Q |
207 |
caatcca |
213 |
Q |
| |
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||||||| |
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| T |
18285677 |
caatcca |
18285671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 15907287 - 15907501
Alignment:
| Q |
8 |
atcccaccaaaaatgagtagtgagttctaagccaataccaactaacttatcagcacaatgg-ttcccatctctataaatatgagaaacaataaaagacat |
106 |
Q |
| |
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|||||||||||| |||||| |||| ||||||||||| ||||| | |||||||||||| ||| || || |||||||| || | ||||||||| ||||| || |
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| T |
15907287 |
atcccaccaaaattgagtattgagatctaagccaatgccaacaagcttatcagcacagtggtttaccctctctatagatgtaagaaacaatgaaagatat |
15907386 |
T |
|
| Q |
107 |
tgaggagagtaaatgtaaacagttatcccacctattccttaagtgccaaggcacaatgg--attagacttgaaagccaaagtgactaacattgagcctgt |
204 |
Q |
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||| || | ||| |||||||| |||||||| |||||||||| | |||| | ||||||| || ||||| ||||||| || |||| |||||| |||| |
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| T |
15907387 |
tgaagaaactaagtgtaaacaattatcccatctattccttagattccaaagaacaatggttttttgacttaaaagccattgtaactagcattgaatctgt |
15907486 |
T |
|
| Q |
205 |
ttcaatccataagtg |
219 |
Q |
| |
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||||||| ||||||| |
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| T |
15907487 |
ttcaatcaataagtg |
15907501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 138639 - 138746
Alignment:
| Q |
56 |
atcagcacaatggttcccatctctataaatatgagaaacaataaaagacattgaggagagtaaatgtaaacagttatcccacctattccttaagtgccaa |
155 |
Q |
| |
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|||||||||||||||||| || ||||||||||||| |||| |||||||||||| || | ||||||||||||||| ||||| || || ||||| |||||| |
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| T |
138639 |
atcagcacaatggttcccttccctataaatatgagttacaaaaaaagacattgatgatattaaatgtaaacagttttcccatctgtttcttaattgccaa |
138738 |
T |
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| Q |
156 |
ggcacaat |
163 |
Q |
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|| ||||| |
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| T |
138739 |
ggaacaat |
138746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 12947050 - 12946946
Alignment:
| Q |
8 |
atcccaccaaaaatgagtagtgagttctaagccaataccaactaacttatcagcacaatggttcccatctctataaatatgagaaacaataaaagacatt |
107 |
Q |
| |
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|||||||||||||| || | |||||||| ||||| | ||| | ||||||||||||||| || || |||||||||||||||| ||| |||||||||||| |
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| T |
12947050 |
atcccaccaaaaataagagctaagttctaaaccaatgcaaacaagcttatcagcacaatgatttccttctctataaatatgagtaaccataaaagacatt |
12946951 |
T |
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| Q |
108 |
gagga |
112 |
Q |
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||||| |
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| T |
12946950 |
gagga |
12946946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 22947 - 23036
Alignment:
| Q |
47 |
aactaacttatcagcacaatggttcccatctctataaatatgagaaacaataaaagacattgaggagagtaaatgtaaacagttatccca |
136 |
Q |
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|||||| | |||||||||||||||||| | ||||||||||||| |||| |||||||||||| || | |||||||||||| || ||||| |
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| T |
22947 |
aactaattgatcagcacaatggttccctttcctataaatatgagttacaaaaaaagacattgatgatattaaatgtaaacaattttccca |
23036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 27362221 - 27362289
Alignment:
| Q |
116 |
taaatgtaaacagttatcccacctattccttaagtgccaaggcacaatgga-ttagacttgaaagccaa |
183 |
Q |
| |
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|||||||| ||||| |||||||||||||| | |||||||||||||| || || |||||||||||||| |
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| T |
27362221 |
taaatgtatgcagttctcccacctattcctcagttgccaaggcacaatagattttgacttgaaagccaa |
27362289 |
T |
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