View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3342_low_118 (Length: 202)

Name: NF3342_low_118
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3342_low_118
NF3342_low_118
[»] chr2 (4 HSPs)
chr2 (5-146)||(28428839-28428980)
chr2 (93-191)||(28428740-28428839)
chr2 (6-77)||(40257749-40257819)
chr2 (5-77)||(14941590-14941662)
[»] chr1 (3 HSPs)
chr1 (6-75)||(14258236-14258305)
chr1 (6-55)||(47311998-47312047)
chr1 (5-73)||(15351191-15351259)
[»] chr8 (6 HSPs)
chr8 (6-74)||(41015974-41016042)
chr8 (6-74)||(36696499-36696568)
chr8 (6-72)||(11597699-11597764)
chr8 (6-52)||(24686667-24686713)
chr8 (7-68)||(23588738-23588799)
chr8 (5-49)||(8568717-8568760)
[»] chr3 (4 HSPs)
chr3 (6-76)||(51206073-51206143)
chr3 (6-52)||(43260931-43260977)
chr3 (10-73)||(52474324-52474387)
chr3 (3-68)||(14887396-14887461)
[»] chr7 (4 HSPs)
chr7 (6-77)||(2736847-2736918)
chr7 (6-81)||(41047270-41047345)
chr7 (1-68)||(40234630-40234697)
chr7 (5-72)||(40236835-40236902)
[»] chr4 (4 HSPs)
chr4 (6-87)||(21443869-21443950)
chr4 (6-76)||(37012615-37012685)
chr4 (6-74)||(40815122-40815189)
chr4 (11-77)||(49030514-49030580)
[»] chr5 (3 HSPs)
chr5 (5-66)||(3476696-3476756)
chr5 (6-74)||(39006944-39007012)
chr5 (6-74)||(11620137-11620205)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 3e-56; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 28428980 - 28428839
Alignment:
Q  5 atttttaatttaatttttccttttatagatatcttaaccagtgtcccaggag-caccggttaacacaaccctttactttattaaacttttcaaaatattt 103  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28428980 atttttaatttaatttttccttttatagataccttaaccagtccccc-ggagacaccggttaacacaaccctttactttattaaacttttcaaaatattt 28428882  T
Q  104 ttctctattttataattttctcaaaacaacaaagatatactat 146  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  28428881 ttctctattttataattttctcaaaacaacaaaaatatactat 28428839  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 28428839 - 28428740
Alignment:
Q  93 tcaaaatatttttctctattttataattttctcaaaacaacaaagatatactat-aatcataatctacttttctccatccaggtgaagctttcatctcac 191  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||    
T  28428839 tcaaaatatttttctctattttataattttctcaaaacaacaaaaatatactatcaatcataatctacttttctccatcctggtgaagctttcatgtcac 28428740  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 40257819 - 40257749
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaacccttt 77  Q
    ||||||||||||| ||||||||| |||||| |||| |||||| | | || ||||||||||||||||||||||    
T  40257819 tttttaatttaatatttccttttttagataccttatccagtg-ctcgggggcaccggttaacacaacccttt 40257749  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 14941662 - 14941590
Alignment:
Q  5 atttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaacccttt 77  Q
    |||||||||||||||||| ||||| ||||||  |||||||||  ||| |  |||||||||||||||| |||||    
T  14941662 atttttaatttaattttttcttttttagatactttaaccagtaccccggaggcaccggttaacacaatccttt 14941590  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 14258236 - 14258305
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaaccct 75  Q
    ||||||||||||||||| ||||| | |||| ||||||||||| |||||||||||||||||||||||||||    
T  14258236 tttttaatttaattttttcttttttggataccttaaccagtgccccaggagcaccggttaacacaaccct 14258305  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 47312047 - 47311998
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtcccagga 55  Q
    |||||||||||||||||| |||| |||||| ||||||||||  |||||||    
T  47312047 tttttaatttaatttttctttttttagataccttaaccagtaccccagga 47311998  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 15351191 - 15351259
Alignment:
Q  5 atttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaacc 73  Q
    ||||||||||||||||||| |||| |||||  ||||||||||   || | |||||||||||||| ||||    
T  15351191 atttttaatttaatttttctttttttagattccttaaccagtactccggaagcaccggttaacataacc 15351259  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 41015974 - 41016042
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaaccc 74  Q
    ||||||||||||||||||||||| |||||| |||||| |||||||| || |||||||||||||||||||    
T  41015974 tttttaatttaatttttccttttttagataccttaacgagtgtcccgggggcaccggttaacacaaccc 41016042  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 36696568 - 36696499
Alignment:
Q  6 tttttaatttaattttt-ccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaaccc 74  Q
    |||||||||| |||||| |||||| |||||| ||||||||||||||| ||| ||||||||||||||||||    
T  36696568 tttttaatttgattttttccttttttagataccttaaccagtgtcccgggaacaccggttaacacaaccc 36696499  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 11597699 - 11597764
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaac 72  Q
    |||||||||||||||||| |||| ||||||  |||| ||||||||| || |||||||||||||||||    
T  11597699 tttttaatttaatttttctttttttagatactttaatcagtgtccc-ggggcaccggttaacacaac 11597764  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 24686667 - 24686713
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtccca 52  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  24686667 tttttaatttaattttttcttttttagatatcgtaaccagtgtccca 24686713  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 23588738 - 23588799
Alignment:
Q  7 ttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaaca 68  Q
    ||||||||||| ||||||||||||||||  ||||||| || |||| || |||||||||||||    
T  23588738 ttttaatttaaattttccttttatagattccttaaccggtatcccgggggcaccggttaaca 23588799  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 8568760 - 8568717
Alignment:
Q  5 atttttaatttaatttttccttttatagatatcttaaccagtgtc 49  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||    
T  8568760 atttttaattta-tttttccttttttagatatcttaacgagtgtc 8568717  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 51206143 - 51206073
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaaccctt 76  Q
    ||||||||||||||||||||||| |||||| |||||| |||| | | || |||||||||||||||||||||    
T  51206143 tttttaatttaatttttccttttttagataccttaactagtgccgcgggggcaccggttaacacaaccctt 51206073  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 43260977 - 43260931
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtccca 52  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||||    
T  43260977 tttttaatttaatttttccttttttagatacattaaccagtgtccca 43260931  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 52474387 - 52474324
Alignment:
Q  10 taatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaacc 73  Q
    |||||||||||||||| || |||||| |||||||||||||   |  ||||||||||||||||||    
T  52474387 taatttaatttttcctcttttagataccttaaccagtgtcatggaggcaccggttaacacaacc 52474324  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 14887461 - 14887396
Alignment:
Q  3 ttatttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaaca 68  Q
    ||||||||||||||| |||||||||| | |||  |||||| |||| ||| || |||||||||||||    
T  14887461 ttatttttaatttaaattttccttttttggattccttaacaagtgccccgggggcaccggttaaca 14887396  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 2736847 - 2736918
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaacccttt 77  Q
    |||||||||||||||||||| || |||||| | |||||||||  ||||| ||||||||||||| ||||||||    
T  2736847 tttttaatttaatttttcctcttttagataccgtaaccagtgctccaggggcaccggttaacagaacccttt 2736918  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 41047345 - 41047270
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaaccctttactt 81  Q
    ||||| ||| ||||||||||||  |||||| |||||||| ||| ||||| | ||||||||||||||||||||||||    
T  41047345 ttttttattaaatttttcctttgttagataccttaaccactgttccaggggtaccggttaacacaaccctttactt 41047270  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 40234630 - 40234697
Alignment:
Q  1 tgttatttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaaca 68  Q
    ||||| |||||||| || |||||||||| || ||  ||||||||||| ||| ||||||||||||||||    
T  40234630 tgttacttttaattcaaattttccttttttaaattccttaaccagtgccccgggagcaccggttaaca 40234697  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 40236835 - 40236902
Alignment:
Q  5 atttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaac 72  Q
    |||||||||||| ||||||||||| |||||| ||||||  |||   | ||||||||||||||||||||    
T  40236835 atttttaatttattttttccttttttagataccttaacatgtgcttcgggagcaccggttaacacaac 40236902  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 21443950 - 21443869
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtcccaggag-caccggttaacacaaccctttactttattaa 87  Q
    |||||||| ||||||||| |||| |||||| ||||||||||||||| |||| || ||||||||||||||||||  ||||||||    
T  21443950 tttttaatctaatttttcattttttagataccttaaccagtgtccc-ggagacaacggttaacacaaccctttcttttattaa 21443869  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 37012615 - 37012685
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaaccctt 76  Q
    |||| |||||||||||||||||| ||||||  |||||||||| ||| || ||||| |||||||||||||||    
T  37012615 ttttcaatttaatttttccttttttagatacattaaccagtgccccgggggcaccagttaacacaaccctt 37012685  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 40815122 - 40815189
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaaccc 74  Q
    |||||||| |||||||||||||| |||||| ||||| || || ||||| ||||||||||||||||||||    
T  40815122 tttttaatctaatttttccttttttagataccttaatcaatg-cccagaagcaccggttaacacaaccc 40815189  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 49030514 - 49030580
Alignment:
Q  11 aatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaacccttt 77  Q
    |||||||||| ||||||| ||||||||||||| ||||  || ||  ||| |||||||||||||||||    
T  49030514 aatttaatttatccttttttagatatcttaactagtgctccggggacactggttaacacaacccttt 49030580  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 3476756 - 3476696
Alignment:
Q  5 atttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaa 66  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||  ||| |||||||||||    
T  3476756 atttttaatttaatttttccttttttagatatcttagccagtgtctgagg-gcaccggttaa 3476696  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 39007012 - 39006944
Alignment:
Q  6 tttttaatttaatttttccttttat-agatatcttaaccagtgtcccaggagcaccggttaacacaaccc 74  Q
    ||||| ||||||||||| ||||| | ||||| |||||||| |||||||||| ||||||||||||||||||    
T  39007012 ttttttatttaattttttctttttttagataccttaaccaatgtcccagga-caccggttaacacaaccc 39006944  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 11620137 - 11620205
Alignment:
Q  6 tttttaatttaatttttccttttatagatatcttaaccagtgtcccaggagcaccggttaacacaaccc 74  Q
    ||||||||||||| ||||||||| |||||| ||||| ||||| |||  | |||||||||||| ||||||    
T  11620137 tttttaatttaatctttccttttttagataccttaatcagtgccccgagggcaccggttaacgcaaccc 11620205  T

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