View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_12 (Length: 450)
Name: NF3342_low_12
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 24864062 - 24864509
Alignment:
| Q |
1 |
gctccctttctatcctctctt------cctcctccgtctctatcctatctggttcaaacacatttggaaaaagtgtttgagacaacttatggaggaccat |
94 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24864062 |
gctccctttctatcctctctttcttttcctcctccgtctctatcctatctggttcaaacacatttggaaaaagtgtttgagacaacttatggaggaccat |
24864161 |
T |
|
| Q |
95 |
aattgggatctggttctccaataacattagatcagaaagaacatcatggtctttcagcacttcagttgccggaccaggtggccgtaaacggctaggaaat |
194 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24864162 |
aattgggatctggttctccaataacattagatcagacagaacatcatgctcttttagcacttcagttgccggaccaggtggccataaacggctaggaaat |
24864261 |
T |
|
| Q |
195 |
tgtgaatctaatccctttgatattagaagttctaacagaaaacatccatctaataacataattttaccgagttcatgtcgttggagttcaatgtgtgtca |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24864262 |
tgtgaatctaatccctttgatattagaagttctaacagaaaacatccatctaataacataattttaccgagttcatgttgttggagttcaatgtgtgtca |
24864361 |
T |
|
| Q |
295 |
cgtagcttgcacgaacctcttcatctaattcccaaactgcttcactgcatttttccaagctaacacttgctacatcagctcctcgatgaagaagagacaa |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24864362 |
cgtagcttgcacgaacctcttcatctaattcccaaactgcttcactgcatttttccaagctaacacttgctacatcagctcctcgatgaagaagagacaa |
24864461 |
T |
|
| Q |
395 |
catgcaccgtaattttacttcttccattagaagtaaatcatctctgct |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24864462 |
catgcaccgtaattttacttcttccattagaagtaaatcatctctgct |
24864509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 41 - 355
Target Start/End: Original strand, 24827511 - 24827825
Alignment:
| Q |
41 |
atctggttcaaacacatttggaaaaagtgtttgagacaacttatggaggaccataattgggatctggttctccaataacattagatcagaaagaacatca |
140 |
Q |
| |
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||||||||||||||||| ||||||||||||||| ||||||||||| || |||| || |||||||| |||||||| |||||||||||||| ||||||||| |
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| T |
24827511 |
atctggttcaaacacatatggaaaaagtgtttgggacaacttatgaagaaccaaaaaggggatctgattctccaacaacattagatcagacagaacatca |
24827610 |
T |
|
| Q |
141 |
tggtctttcagcacttcagttgccggaccaggtggccgtaaacggctaggaaattgtgaatctaatccctttgatattagaagttctaacagaaaacatc |
240 |
Q |
| |
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| ||||||||||||||||| ||| |||| |||||| |||||||||||||| ||| ||||| |||||||||||||| ||||| || ||||||||||||| |
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| T |
24827611 |
tcgtctttcagcacttcagctgcgggactaggtggaaataaacggctaggaagttgagaatccaatccctttgatatgagaagctccaacagaaaacatc |
24827710 |
T |
|
| Q |
241 |
catctaataacataattttaccgagttcatgtcgttggagttcaatgtgtgtcacgtagcttgcacgaacctcttcatctaattcccaaactgcttcact |
340 |
Q |
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|||| | ||||||||||||| ||||||||||||||| ||||| || || | || ||||| | |||||||||||| ||||||||||||||| || ||||| |
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| T |
24827711 |
catccactaacataattttagcgagttcatgtcgttcgagtttaaggtctcccaggtagcattcacgaacctctttatctaattcccaaacggcatcact |
24827810 |
T |
|
| Q |
341 |
gcatttttccaagct |
355 |
Q |
| |
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||||| |||||||| |
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| T |
24827811 |
gcattgctccaagct |
24827825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 53 - 418
Target Start/End: Original strand, 24835259 - 24835639
Alignment:
| Q |
53 |
cacatttggaaaaagtgtttgagacaacttatggaggaccataattgggatctggttctccaataacattagatcagaaagaacatcatggtctttcagc |
152 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| || |||| ||||||||||||||||||||| |||||||||||||| | |||||||| |||||| || |
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| T |
24835259 |
cacatttggaaaaagtgtttgaaacaactcatgaagaaccagaattgggatctggttctccaacaacattagatcagacaaaacatcatcgtcttttagg |
24835358 |
T |
|
| Q |
153 |
acttcagttgccggaccaggtggccgtaaacggctaggaaattgtgaatctaatcc---------------ctttgatattagaagttctaacagaaaac |
237 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||| || | | |||| |||||| ||||||||| ||||| ||||||||||||| |
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| T |
24835359 |
acttcagctgccggaccagatggctttaaacggcttttaagtcgagaatttaatccctttgatccctctgactttgatatgagaagctctaacagaaaac |
24835458 |
T |
|
| Q |
238 |
atccatctaataacataattttaccgagttcatgtcgttggagttcaatgtgtgtcacgtagcttgcacgaacctcttcatctaattcccaaactgcttc |
337 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| ||| ||| | || | ||||| || ||||||||||||| |||||||||||||||||||||||| |
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| T |
24835459 |
atccatccaataacataattttagcgagttcctgttgttcaaattttagcgaggtcacataacttgcacgaaccttttcatctaattcccaaactgcttc |
24835558 |
T |
|
| Q |
338 |
actgcatttttccaagctaacacttgctacatcagctcctcgatgaagaagagacaacatgcaccgtaattttacttcttc |
418 |
Q |
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||||||||| | |||||| ||| |||| || | ||||||| ||||| ||||||||||||||| |||||||| |||||||| |
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| T |
24835559 |
actgcatttcttcaagctttcacgtgctgcacctgctcctctatgaataagagacaacatgcagcgtaatttgacttcttc |
24835639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 51 - 318
Target Start/End: Original strand, 24727674 - 24727941
Alignment:
| Q |
51 |
aacacatttggaaaaagtgtttgagacaacttatggaggaccataattgggatctggttctccaataacattagatcag----aaagaacatcatggtct |
146 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| || ||| ||||||||||||||||||||||||| || |||||| |||||| |
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| T |
24727674 |
aacacatttggaaaaagtgtttcagccaacttatggaggacctgaa----gatttggttctccaataacattagatcagacaaaacaaacatcctggtct |
24727769 |
T |
|
| Q |
147 |
ttcagcacttcagttgccggaccaggtggccgtaaacggctaggaaattgtgaatctaatccctttgatattagaagttctaacagaaaacatccatcta |
246 |
Q |
| |
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|| |||||||||| |||| |||||||||| |||||| |||||||| ||| |||||||||| ||||||||| ||||| ||||||||||||||| |||| | |
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| T |
24727770 |
ttgagcacttcagatgccagaccaggtggatgtaaactgctaggaagttgagaatctaatctctttgatatgagaagctctaacagaaaacatgcatcca |
24727869 |
T |
|
| Q |
247 |
ataacataattttaccgagttcatgtcgttggagttcaatgtgtgtcacgtagcttgcacgaacctcttcat |
318 |
Q |
| |
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|| ||||||| || | |||||| | || |||||||||| || || ||||||||||||||||||||||| |
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| T |
24727870 |
ctagcataattgtagctagttcacatgtttcaagttcaatgtttgccaggtagcttgcacgaacctcttcat |
24727941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 24897346 - 24897418
Alignment:
| Q |
200 |
atctaatccctttgatattagaagttctaacagaaaacatccatctaataacataattttaccgagttcatgt |
272 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||||||||| |
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|
| T |
24897346 |
atctaacccttttgatattagaagctctaacagaaaacaaccatctactaacataatttttgcgagttcatgt |
24897418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 442
Target Start/End: Complemental strand, 24899046 - 24898991
Alignment:
| Q |
387 |
agagacaacatgcaccgtaattttacttcttccattagaagtaaatcatctctgct |
442 |
Q |
| |
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|||||||||||| | || ||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
24899046 |
agagacaacatggagcgcaatttgacttcttccattagaagtaaatcttctctgct |
24898991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 24856068 - 24856126
Alignment:
| Q |
201 |
tctaatccctttgatattagaagttctaacagaaaacatccatctaataacataatttt |
259 |
Q |
| |
|
||||| || |||||||||||||| || ||||||||||| ||||||| |||||||||||| |
|
|
| T |
24856068 |
tctaacccttttgatattagaagctccaacagaaaacaaccatctactaacataatttt |
24856126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 24899391 - 24899271
Alignment:
| Q |
48 |
tcaaacacatttggaaaaagtgtttgagacaacttatggaggaccataattgggatctggttctccaataacattagatcagaaagaacatcatggtctt |
147 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||| || || || | |||||| || || || ||||| |||||||||||||| | |||||| | ||||| |
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|
| T |
24899391 |
tcaaaaacatttgggaaaagaatttgagacaacttgtgaagtactaaaattggtatttgattttccaacaacattagatcagacaaaacatcttcgtctt |
24899292 |
T |
|
| Q |
148 |
tcagcacttcagttgccggac |
168 |
Q |
| |
|
| || ||||||| ||| |||| |
|
|
| T |
24899291 |
ttagtacttcaggtgcaggac |
24899271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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