View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_13 (Length: 450)
Name: NF3342_low_13
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 5054029 - 5053585
Alignment:
| Q |
1 |
tttcttttctttcctttcatttctactagacatggtttaattgttttctgcaagcgcaattgcgatgatataaaagattttgaagtctctccaatagtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
5054029 |
tttcttttctttcctttcatttctactagacatggtttaattgttttctgcaagcgcaattgccaccatataaaagattttgaagtctctccaatagtat |
5053930 |
T |
|
| Q |
101 |
cagtaaccactattgcaactgcagtatcaaggattttgaagtctccgcaacagtattgccacggtaatataagggattttgaagcctccgcaacagtatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5053929 |
cagtaaccactattgcaactgcagtatcaaggattttgaagtctccgcaacagtattgccacggtaatataagggattttgaagcctccacaacagtatt |
5053830 |
T |
|
| Q |
201 |
gccactgtaatataagggattttaaagtctccacaacagtattgcaaccgcaattttgacatcttattcctgcatttttctgcaatataaaggtttgcaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5053829 |
gccactgtaatataagggattttaaagtctccacaacagtattgcaaccgcaattttgacatcttattcccgcatttttctgcaatataaaggtttgcaa |
5053730 |
T |
|
| Q |
301 |
cataactagaaccactatatataatctatagttggtagtattagttttgtcaccgtcaagggacaatagtagttgtatagttttcagaaattgattcaaa |
400 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5053729 |
cgtaactagaaccactatatataatctatagttggtagtattagttttgccaccgtcgagggacaatagtagttgtatagttttcagaaattgattcaaa |
5053630 |
T |
|
| Q |
401 |
ttctgtgatgcaaacaagtgaaatgagcgctttttctgtgctgct |
445 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5053629 |
ttctgtgatgctaacaagtgaaatgagcgctttttctgtgctgct |
5053585 |
T |
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