View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_14 (Length: 444)
Name: NF3342_low_14
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 34866359 - 34866767
Alignment:
| Q |
18 |
ctttccagttagcccttctgtaggtagcactttgtgagacatcgacaaccagtctctctgataccatttgataagtagtcgagagcctttgaagaaatct |
117 |
Q |
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| T |
34866359 |
ctttccagttagcccttctgtaggtagcactttgtgagacatcgacaaccagtctc--tgataccatttgataagtagtcgagagcatttggagaaatct |
34866456 |
T |
|
| Q |
118 |
cccttaaagctagctgtcaagaaggaagaacctaacaactcaaatactacccgatgctagacttaggccctcccaaaatacccaagttcctgtcaatatt |
217 |
Q |
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| T |
34866457 |
cccttaaagctagctgtcaagaaggaagaacctaacaactcaaatactacccgatgctagacttaggccctcccaaaatacccaagttcctgtcaatatt |
34866556 |
T |
|
| Q |
218 |
ttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagcttatttacaacttatttgaatttacctgatgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866557 |
ttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagcttatttacaacttatttgaatttacctgatgac |
34866656 |
T |
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| Q |
318 |
ataagcccttgtcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaagctgtcttaaaatttggattggctctaactcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866657 |
ataagcccttgtcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaagctgtcttaaaatttggattggctctaactcaa |
34866756 |
T |
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| Q |
418 |
ccctacaaaat |
428 |
Q |
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| T |
34866757 |
ccctacaaaat |
34866767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 186 - 428
Target Start/End: Complemental strand, 51857530 - 51857288
Alignment:
| Q |
186 |
cctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagct |
285 |
Q |
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||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| || |
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| T |
51857530 |
cctcccaaaatacccaagtccctgtcaatattttactcatctacttgcattaataaataagccacatataaatagtattaagggagtgtttggaagatct |
51857431 |
T |
|
| Q |
286 |
tatttacaacttatttgaatttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaag |
385 |
Q |
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|| | ||||||| |||||||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51857430 |
tactaacaacttttttgaatttacctgatgacacatgcccctgtcgaagtgtttggaacatgacagaacttataaaaatagcttataacatgtttaaaag |
51857331 |
T |
|
| Q |
386 |
ctgtcttaaaatttggattggctctaactcaaccctacaaaat |
428 |
Q |
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| T |
51857330 |
ctgtcttaaaatttggattggctctaactcaaccctacaaaat |
51857288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 51857638 - 51857575
Alignment:
| Q |
105 |
tttgaagaaatctc--ccttaaagctagctgtcaagaaggaagaacctaacaactcaaatacta |
166 |
Q |
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|||| ||||||||| ||| ||||||||||||||||||||||||||| | | ||| |||||||| |
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|
| T |
51857638 |
tttggagaaatctctgcctaaaagctagctgtcaagaaggaagaaccaagccacttaaatacta |
51857575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 11171478 - 11171515
Alignment:
| Q |
271 |
gtgtttggaagagcttatttacaacttatttgaattta |
308 |
Q |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
11171478 |
gtgtttggaagagtttatttacaacttatttgaattta |
11171515 |
T |
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