View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_16 (Length: 429)
Name: NF3342_low_16
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 36025577 - 36025152
Alignment:
| Q |
19 |
gagaagcctaagatcgaagactcggaaggatagggaagtaaacctgagaaacttgtcgataaattgatggttaaaataaattatttagataattaagaaa |
118 |
Q |
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| T |
36025577 |
gagaagccgaagatcgaagacccggaaagatagggaagtaaacctgagaaacttgtcgataaattgatgattaaaataaattatttagataattaagaaa |
36025478 |
T |
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| Q |
119 |
gttagagataaagaaaatgtcactcaagaagtagacaatacataggtagataatccccaccaaaaa-----------------caattctaggctaggaa |
201 |
Q |
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| T |
36025477 |
gttagagataaagaaaatgtcactcaagaagtagacaatacataggtagataatccccaccaacaaaacaacaaagatgaaagcaattctaggctaggaa |
36025378 |
T |
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| Q |
202 |
aaccttctgtcaaaatattggtggtggatttgttactatccatgtggtgatttaggaacagctgaagacacaattgtttcattgtgtgaaaaacgtgctg |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025377 |
aaccttctgtcaaaatattggtggtggatttgttactatccatgtggtgctttaggaacagctgaagacacaattgtttcattgtgtgaaaaacgtgctg |
36025278 |
T |
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| Q |
302 |
ggaaatcacccttttatgacatgtgtgtaggcttgtctcattttccttagtcacgacttggtagcattaaccaacggcatgcatatgaaccatgtgtgtc |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36025277 |
ggaaatcacccttttatgacatgtgtgtaggcttgtctcattttccttagtcacgacttggtatgattaaccaacggcatgcatatgaaccatgtgtgtc |
36025178 |
T |
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| Q |
402 |
aatctcagcaatctctgtcacatatt |
427 |
Q |
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| T |
36025177 |
aatctcagcaatctctgtcacatatt |
36025152 |
T |
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Back To:
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 46116198 - 46116234
Alignment:
| Q |
71 |
ttgtcgataaattgatggttaaaataaattatttaga |
107 |
Q |
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| T |
46116198 |
ttgtagatagattgatggttaaaataaattatttaga |
46116234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 46129332 - 46129368
Alignment:
| Q |
71 |
ttgtcgataaattgatggttaaaataaattatttaga |
107 |
Q |
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|||| |||| ||||||||||||||||||||||||||| |
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| T |
46129332 |
ttgtagatagattgatggttaaaataaattatttaga |
46129368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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