View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_17 (Length: 428)
Name: NF3342_low_17
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 4458707 - 4458287
Alignment:
| Q |
1 |
taataaactcatcttcatattaaatataaagtgaaaagtgtacaaatgtttttctagtaatcagtaacagtaccaagtgacacacacac------taatc |
94 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4458707 |
taataaactcatcttcatattaaatatagagtgaaaagtgtagaaatgtttttctagtaatcagtaacagtaccaagtgacacacacacacacactaatc |
4458608 |
T |
|
| Q |
95 |
tatgtagtaatttgggtactaactagaactaataaatcaactaacaatggttagtgtaagtaaataactataaccagttaagttaagtaacaccctccct |
194 |
Q |
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| T |
4458607 |
tatgtagtaatttggatactaactagaactaataaatcaactaacaatggttagtgtaagtaaataactataaccagttaagttaagtaacaccctccct |
4458508 |
T |
|
| Q |
195 |
caagtttgggctatgtaaattacaaaggcctagcttggaaataaaagaag--------------tgaagaggcttagtgaagacatattatccagctgag |
280 |
Q |
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| T |
4458507 |
caagtttgggctatgtaaattacaaaggcctagcttggaaataaaagaagtgaattacgtgacatgaagaggcttagtgaagac--attatccagctgag |
4458410 |
T |
|
| Q |
281 |
aggaggaaggcacatgtagtaaatgaatgagtccttttctgatcttcttgcggataacatgacaattaatttcgatgtgcttcgatcgttcgtgaaaggt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| |||||||| |
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| T |
4458409 |
aggaggaaggcacatgtagtaaatgaatgagtccttttctgatcttcttgtggataacatgacaatcaatttcgatgtgcttcgattgttcatgaaaggt |
4458310 |
T |
|
| Q |
381 |
cggattgtgggcaagatagatag |
403 |
Q |
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| T |
4458309 |
cggattgtgggcaaggtagatag |
4458287 |
T |
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