View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_18 (Length: 428)
Name: NF3342_low_18
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 268 - 411
Target Start/End: Original strand, 9394743 - 9394886
Alignment:
| Q |
268 |
taaatagtatgttctaatttgaatttaacctttagatgagtcacatctttagttccaaagttaaaaagagagnnnnnnnnngttgtatttgaaaaaggta |
367 |
Q |
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| T |
9394743 |
taaatagtatgttctaatttgaatttaacctttagatgagtcacatctttagttccaaagttaaaaagagagaaaaaaaaagttgtatttgaaaaaggta |
9394842 |
T |
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| Q |
368 |
aatgaaggagcttgtgaaaatatttaagttgagataccaatttc |
411 |
Q |
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| T |
9394843 |
aatgaaggagcttgtgaaaatatttaagttgagataccaatttc |
9394886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 9394622 - 9394742
Alignment:
| Q |
14 |
ttaagctgctactataaaatattttctgtgcacttttgaaattccatcatccattttccttgtatacacaaataagaaaattttaaaatcatctccaaca |
113 |
Q |
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| T |
9394622 |
ttaagctgctactataaaatattttctttgcacttttgaaattccatcatccattttccttgtatacacaaataagaaaatttgaaaatcatctccaaca |
9394721 |
T |
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| Q |
114 |
caagaaagcttcacatttgtt |
134 |
Q |
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| T |
9394722 |
caagaaagcttcacatttgtt |
9394742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 9406070 - 9406190
Alignment:
| Q |
54 |
attccatcatccattttccttgtatacacaaataagaaaattttaaaatcatctccaacacaagaaagcttcacatttgttcttctatcacacaaaaaag |
153 |
Q |
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| T |
9406070 |
attccatcatccattttccttgtatacacaaataagaaaattttaaaatcatctccaacacaagaaagcttcacattggttcttctatcacacaaccaag |
9406169 |
T |
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| Q |
154 |
atatataacctctgatgacaa |
174 |
Q |
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| T |
9406170 |
atatacaacctctgatgacaa |
9406190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 9424313 - 9424407
Alignment:
| Q |
54 |
attccatcatccattttccttgtatacacaaataagaaaattttaaaatcatctccaacacaagaaagcttcacatttgttcttctatcacacaa |
148 |
Q |
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| T |
9424313 |
attccatcatccattttccttatatacacaaataagaaaattttaaaatcatctccatcacaagaaagcttcacattggttcttctatcacacaa |
9424407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 53594664 - 53594565
Alignment:
| Q |
75 |
gtatacacaaataagaaaattttaaaatcatctccaacacaagaaagcttcacatttgttcttctatcacacaaaaaagatatataacctctgatgacaa |
174 |
Q |
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|||| ||||||||| || ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53594664 |
gtatgcacaaataacaagattttaaaatcatctccaagacataaaagcttcacattggttcttctatcacacaaccaagatatataacctctgatgacaa |
53594565 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 37982153 - 37982063
Alignment:
| Q |
118 |
aaagcttcacatttgttcttctatcacacaaaaaagatatataacctctgatg-------acaagtaatgcaaaaacagacacagtggtta |
201 |
Q |
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| T |
37982153 |
aaagcttcacattggttcttctaccacacaaccaagatatataacctctgatgacaatttacaagtaatgcaaaaacaggcacagtggtta |
37982063 |
T |
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