View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_20 (Length: 411)
Name: NF3342_low_20
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 33163557 - 33163936
Alignment:
| Q |
7 |
tgagaagaatgtgttggtggttattttgcaggtactttctgaaggctggatatgctgttatctttttgcaccgtaggtaaatttcttatcatgtaattta |
106 |
Q |
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| T |
33163557 |
tgagaagaatgtgttggtggttattttgcaggtactttctgaaggctggatatgctgttatctttttgcaccgtaggtaaatttcttatcatgtaattta |
33163656 |
T |
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| Q |
107 |
tccttttctcacgtttgatgtgttgatttaccaatgaataattatgcagggggagttaccagccattttgcagatccattcctgatgatcccttacttga |
206 |
Q |
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| T |
33163657 |
tccttttctcatgtttgatgtgttgatttaccaatgaataattatgcagggggagttaccagccattttgcagatccattcctgatgatcccttacttga |
33163756 |
T |
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| Q |
207 |
atgcttcgagccaaccaacgatttaaatattcaaggttttccatttctgttttctcctcgcctcatgccataataagataaatagacagactaatatcta |
306 |
Q |
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| T |
33163757 |
atgcttcgagctgaccaacgatttaaatattcaaggttttccatttctgttttctcctcgcctcatgccataataagataaat----agactaatatcta |
33163852 |
T |
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| Q |
307 |
taatcgtatgaacaatcattnnnnnnnnnnnnnnncattgcacttgatatcttgatagtccaacaatacttgacaatgcatgttattaatg |
397 |
Q |
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| T |
33163853 |
taatcgtatgaacaatcatt-------tacatatacattgcacttgatatcttgatagtctaacaatacttgacaatgcatgttattaatg |
33163936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 121 - 264
Target Start/End: Complemental strand, 46162427 - 46162285
Alignment:
| Q |
121 |
ttgatgtgttgatttaccaatgaataattatgcagggggagttaccagccattttgcagatccattcctgatgatcccttacttgaatgcttcgagccaa |
220 |
Q |
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| T |
46162427 |
ttgatgtgttaatt-accaatgaatatttatgcaggggaagtttccagccattttgcagatcccttcccgaggatcccttacttgaatgcttcgagccca |
46162329 |
T |
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| Q |
221 |
ccaacgatttaaatattcaaggttttccatttctgttttctcct |
264 |
Q |
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| T |
46162328 |
ccaacgacttaaacattcaaggttttcagtttctgcattctcct |
46162285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 46162558 - 46162488
Alignment:
| Q |
22 |
ggtggttattttgcaggtactttctgaaggctggatatgctgttatctttttgcaccgtaggtaaatttct |
92 |
Q |
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| T |
46162558 |
ggtggttactttgcaggtactttctgaaggctggatatgctgttatctttctgtaccggaggtaaatttct |
46162488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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