View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3342_low_21 (Length: 410)

Name: NF3342_low_21
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3342_low_21
NF3342_low_21
[»] chr3 (3 HSPs)
chr3 (64-410)||(25914943-25915289)
chr3 (145-410)||(25901006-25901271)
chr3 (1-29)||(25914879-25914907)
[»] chr4 (11 HSPs)
chr4 (165-406)||(10553293-10553534)
chr4 (165-406)||(10571023-10571264)
chr4 (145-303)||(10464472-10464630)
chr4 (150-226)||(10482452-10482528)
chr4 (153-228)||(10475482-10475557)
chr4 (148-231)||(829343-829425)
chr4 (164-226)||(10468313-10468375)
chr4 (146-223)||(8437025-8437102)
chr4 (146-223)||(8447379-8447456)
chr4 (180-232)||(838005-838057)
chr4 (153-228)||(10484704-10484779)
[»] chr5 (1 HSPs)
chr5 (147-288)||(37935285-37935426)
[»] chr7 (1 HSPs)
chr7 (181-228)||(19645452-19645499)
[»] chr2 (1 HSPs)
chr2 (184-224)||(21021047-21021087)


Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 64 - 410
Target Start/End: Original strand, 25914943 - 25915289
Alignment:
Q  64 tttgatttcaaacaactgaatcggttaagcaatcccacaatctatttctagtattataaattaaaccaacaaggctgtaaagaagtaacataaattctat 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25914943 tttgatttcaaacaactgaatcggttaagcaatcccacaatctatttctagtattataaattaaaccaacaaggctgtaaagaagtgacataaattctat 25915042  T
Q  164 caagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaa 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915043 caagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaa 25915142  T
Q  264 ttggctcacctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatgg 363  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915143 ttggctcgcctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatgg 25915242  T
Q  364 caagaactccatcgtttcaaatttcaataaagattggcttgaacaaa 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25915243 caagaactccatcgtttcaaatttcaataaagattggcttgaacaaa 25915289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 145 - 410
Target Start/End: Original strand, 25901006 - 25901271
Alignment:
Q  145 gaagtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgt 244  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  25901006 gaagtaacataaattctaacaagtaatatgagaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttggcccacaaccactgt 25901105  T
Q  245 actttattagtaatttgaattggctcacctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctt 344  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25901106 actttattagtaatttgaattggctcgcctctattttctctgcatttatagataaatgctgcgtcgatttgatcatttgctaatatcaatgcatcacctt 25901205  T
Q  345 tcttagaaaggtacaatggcaagaactccatcgtttcaaatttcaataaagattggcttgaacaaa 410  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  25901206 tcttagaaaggtacaatggcaataactccatcgtttcaaatttcaataaatattggcttgaacaaa 25901271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 25914879 - 25914907
Alignment:
Q  1 aatactacgtaacagcaatgaaattgaag 29  Q
    |||||||||||||||||||||||||||||    
T  25914879 aatactacgtaacagcaatgaaattgaag 25914907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 165 - 406
Target Start/End: Original strand, 10553293 - 10553534
Alignment:
Q  165 aagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaat 264  Q
    |||||||||||  |||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||| ||||||| || |||||||||||||  |||    
T  10553293 aagtaatatgaggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaat 10553392  T
Q  265 tggctcacctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatggc 364  Q
    | |||| |||||||| |||||||| ||||||||||||| ||||||| ||| ||||||||| ||||||||||  ||  | |||||||||||||||||||||    
T  10553393 ttgctcgcctctattgtctctgcaattatagataaatgttgtgtcgttttcatcatttgcaaatatcaatgtttccgcattcttagaaaggtacaatggc 10553492  T
Q  365 aagaactccatcgtttcaaatttcaataaagattggcttgaa 406  Q
    || ||||||||||||||||||||||||||| ||| |||||||    
T  10553493 aataactccatcgtttcaaatttcaataaatattcgcttgaa 10553534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 165 - 406
Target Start/End: Original strand, 10571023 - 10571264
Alignment:
Q  165 aagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaat 264  Q
    |||||||||||  |||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||| ||||||| || |||||||||||||  |||    
T  10571023 aagtaatatgaggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaat 10571122  T
Q  265 tggctcacctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatggc 364  Q
    | |||| |||||||| |||||||| ||||||||||||| ||||||| ||| ||||||||| ||||||||||  ||  | |||||||||||||||||||||    
T  10571123 ttgctcgcctctattgtctctgcaattatagataaatgttgtgtcgttttcatcatttgcaaatatcaatgtttccgcattcttagaaaggtacaatggc 10571222  T
Q  365 aagaactccatcgtttcaaatttcaataaagattggcttgaa 406  Q
    || ||||||||||||||||||||||||||| ||| |||||||    
T  10571223 aataactccatcgtttcaaatttcaataaatattcgcttgaa 10571264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 303
Target Start/End: Complemental strand, 10464630 - 10464472
Alignment:
Q  145 gaagtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgt 244  Q
    ||||||| |||||||||| |||||||||||   ||||||||||||||||||||  || ||||| | |||||||||||||||||| ||   ||||||   |    
T  10464630 gaagtaatataaattctaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactagactttcaacgtaatccttggcatgcaaccataat 10464531  T
Q  245 actttattagtaatttgaattggctcacctctattttctctgcatttatagataaatgc 303  Q
    ||  || ||||||||  |||| ||||  ||||||| ||| ||| |||||||||||||||    
T  10464530 acagtactagtaattccaattcgctctactctattgtctttgcctttatagataaatgc 10464472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 10482528 - 10482452
Alignment:
Q  150 aacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatcc 226  Q
    ||||||||||| | |||||||||||   |||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  10482528 aacataaattcaaacaagtaatatgtggaagagaaactcactttcaatgagtcgaaaccaaactttcaacgtaatcc 10482452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 10475557 - 10475482
Alignment:
Q  153 ataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatcctt 228  Q
    |||||||| | |||||||||||   ||||||||||||||||||||  || ||||| ||||||||||||||||||||    
T  10475557 ataaattcaaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactaaactttcaacgtaatcctt 10475482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 829343 - 829425
Alignment:
Q  148 gtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagc 231  Q
    ||||||||||||| | ||||| |||||  |||||||||||||||||||   | | |||||||||||||||| ||||||||||||    
T  829343 gtaacataaattcaaacaagtcatatgtgaaagagaaactcactttcatagaatcgaaaccaaactttcaa-gtaatccttagc 829425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 10468375 - 10468313
Alignment:
Q  164 caagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatcc 226  Q
    |||||||||||   |||||||||||||||||||  |||  |||||||||||||||||||||||    
T  10468375 caagtaatatgtggaagagaaactcactttcaatgagtcaaaaccaaactttcaacgtaatcc 10468313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 8437025 - 8437102
Alignment:
Q  146 aagtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaa 223  Q
    |||||||| |||||| |  ||||||||||   || |||||||||| |||||| ||| |||||||||||||||||||||    
T  8437025 aagtaacaaaaattcaaaaaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8437102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 8447379 - 8447456
Alignment:
Q  146 aagtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaa 223  Q
    |||||||| |||||  | |||||||||||   || |||||||||| |||||| ||| |||||||||||||||||||||    
T  8447379 aagtaacaaaaattaaaacaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8447456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 838057 - 838005
Alignment:
Q  180 gagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcc 232  Q
    |||||||||| ||||||  | |||||||||||||||||| |||||||||||||    
T  838057 gagaaactcattttcaatgaattgaaaccaaactttcaaagtaatccttagcc 838005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 10484779 - 10484704
Alignment:
Q  153 ataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatcctt 228  Q
    |||||||| | |||||||||||   |||||| |||||||||||||  || ||||| | ||||||||||||||||||    
T  10484779 ataaattcaaacaagtaatatgtggaagagacactcactttcaacgtgtcgaaactagactttcaacgtaatcctt 10484704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 288
Target Start/End: Complemental strand, 37935426 - 37935285
Alignment:
Q  147 agtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtac 246  Q
    |||||||| ||||||| ||||||||||||  |||||| |||||||||||   ||| | |||||||||||||||||||||||| |||| |||||||| |      
T  37935426 agtaacatgaattctagcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccgcaaccaccatgt 37935327  T
Q  247 tttattagtaatttgaattggctcacctctattttctctgca 288  Q
    | |||||||||||  ||||  ||||| | |||| ||||||||    
T  37935326 tctattagtaattctaattttctcacatttattctctctgca 37935285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 19645452 - 19645499
Alignment:
Q  181 agaaactcactttcaactagttgaaaccaaactttcaacgtaatcctt 228  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  19645452 agaaacttactttcaacaagttgaaaccaaactttcaacataatcctt 19645499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 21021047 - 21021087
Alignment:
Q  184 aactcactttcaactagttgaaaccaaactttcaacgtaat 224  Q
    |||| ||||||||| ||||||||||||||||||||| ||||    
T  21021047 aacttactttcaacaagttgaaaccaaactttcaacataat 21021087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University