View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_22 (Length: 402)
Name: NF3342_low_22
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 5670053 - 5670425
Alignment:
| Q |
11 |
cacagatgaaatacaaaagaacgcgtgccgtatatagacggaacaaacagaaaccaacacaaccataagacagcctcggttaaactgataaaaataaaca |
110 |
Q |
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|||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5670053 |
cacagatgaaatacaaaacaacgcgcgccgtataaagacggaacaaacagaaaccaacacaaccataagacagcctcggctaaactgataaaaataaaca |
5670152 |
T |
|
| Q |
111 |
caaccacaccaacacaaagcagcatctcagccaactaatagaaaaactgacaaaaacagccgcgacataacagggacgaaacagtaatagatcagcgtca |
210 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5670153 |
caaccac--caacacaaagcagcatctcagccaactaatagcaaaactgacaaaaacagccgcgacataacagggacgaaacagtaatagatcagcatca |
5670250 |
T |
|
| Q |
211 |
gcagaactggaag-nnnnnnnnncagcgttggagcaaaccaaaaatcctagggaaacacaaaatctctgcagaaatggagcagaacctgaaaaaccagca |
309 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5670251 |
gcagaactggaagaaaaaaaaaacagcgttggagcaaacaaaaaatcctagggaaacacaaaatctctgcagaaatggagcagaacctgaaaaaccagca |
5670350 |
T |
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| Q |
310 |
gcagatacagatgctgcagggctggaataaccagaagaacctctaaaagacacaccctctacctcatgaggcaat |
384 |
Q |
| |
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| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5670351 |
gaagatacagaagctgcagagctggaataaccagaagaacctctaaaagacacaccctctacctcatgaggcaat |
5670425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 5693724 - 5694094
Alignment:
| Q |
11 |
cacagatgaaatacaaaagaacgcgtgccgtatatagacggaacaaacagaaaccaacacaaccataagacagcctcggttaaactgataaaaataaaca |
110 |
Q |
| |
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|||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5693724 |
cacagatgaaatacaaaacaacgcgcgccgtataaagacggaacaaacagaaaccaacacaaccataagacagcctcggctaaactgataaaaataaaca |
5693823 |
T |
|
| Q |
111 |
caaccacaccaacacaaagcagcatctcagccaactaatagaaaaactgacaaaaacagccgcgacataacagggacgaaacagtaatagatcagcgtca |
210 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
5693824 |
caac--caccaacacagagcagcatctcagccaactaatagcaaaactgacaaaaacagccgcgtcataacagggacgaaacagtaatagaaaagcgtca |
5693921 |
T |
|
| Q |
211 |
gcagaactggaagnnnnnnnnncagcgttggagcaaaccaaaaatcctagggaaacacaaaatctctgcagaaatggagcagaacctgaaaaaccagcag |
310 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5693922 |
gcagaactggaa-aaaaaaaaacagcgctggagcaaaccaaaaatcctagggaaacacaaaatctctgcagaaatggagcagaacctgaaaaaccagcag |
5694020 |
T |
|
| Q |
311 |
cagatacagatgctgcagggctggaataaccagaagaacctctaaaagacacaccctctacctcatgaggcaat |
384 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5694021 |
cagatacagaagctgcagagctggaataaccagaagaacctctaaaagacacaccctctacctcatgaggcaat |
5694094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 5679541 - 5679918
Alignment:
| Q |
12 |
acagatgaaatacaaaagaacgcgtgccgtatatagacggaacaaacagaaaccaacacaaccataagacagcctcggttaaactgataaaaataaacac |
111 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
5679541 |
acagatgaaatacaaaacaacggacaccgtatatagacggaacaaacagaaaccaacacaaccataagacagcctcggctaaactgttaaaaataaacac |
5679640 |
T |
|
| Q |
112 |
aaccacaccaacacaaagcagcatctcagccaactaatagaaaaactgacaaaaacagccgcgacataacagggacgaaacagtaatagatcagcgtcag |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||||||||||||||||||||| |||| |||| |
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| T |
5679641 |
aaccac--caacacaaagcagcatctcagccaactaatagcaaaaatgacaaaaacagctgggacataacagggacgaaacagtaatagaacagcatcag |
5679738 |
T |
|
| Q |
212 |
cagaactggaag-------nnnnnnnnncagcgttggagcaaaccaaaaatcctagggaaacacaaaatctctgcagaaatggagcagaacctgaaaaac |
304 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5679739 |
cagaactgaaagaaacaaaaaaaaaaaacagagttggagcaaaccaaaaatcctagggaaacacgaaatctctgcagaaatggagcagaacctgaaaaac |
5679838 |
T |
|
| Q |
305 |
cagcagcagatacagatgctgcagggctggaataaccagaagaacctctaaaagacacaccctctacctcatgaggcaat |
384 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5679839 |
cagcagcagatacagaagctgcagagctggaataaccagaagaacctcgaaaagacacaccctctacctcatgaggcaat |
5679918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 5793533 - 5793614
Alignment:
| Q |
303 |
accagcagcagatacagatgctgcagggctggaataaccagaagaacctctaaaagacacaccctctacctcatgaggcaat |
384 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| ||| ||||||| ||||||||||| |||| ||||||||||||||||||| |
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| T |
5793533 |
accagcagcagatacagaagctgcagagctggattaaacagaagagcctctaaaagatacacactctacctcatgaggcaat |
5793614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 5793379 - 5793444
Alignment:
| Q |
121 |
aacacaaagcagcatctcagccaactaatagaaaaactgacaaaaacagccgcgacataacaggga |
186 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
5793379 |
aacacaaagcagcatctaagccaactaatagcaaaactgacaaaaacagtagcaacataacaggga |
5793444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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