View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_23 (Length: 400)
Name: NF3342_low_23
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 28786211 - 28786569
Alignment:
| Q |
19 |
ttgtcttcattatgcatcatagacttacttataaattaaatcatttattaaattatcactcaaaattagtaaagttgttcttaccgtaatttaaattttc |
118 |
Q |
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| T |
28786211 |
ttgtcttcattatgcatcatagacttacttataaattaaatcatttattaaattatcactcaaaattagtaaagttgttcttaccgtaatttaaattttc |
28786310 |
T |
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| Q |
119 |
atgtttcccnnnnnnnnnnnnnnnnnnnngagagaaaactaaaatgagagaatatactagttcgtcaatttagtttcgccgttaacagtttttgatgtgt |
218 |
Q |
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| T |
28786311 |
atgtttcccttttttt-------------gagagaaagctaaaatgagagaatatactaattcgtcaatttagtttcgccgttaacagtttt-gatgtgt |
28786396 |
T |
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| Q |
219 |
gacataacctctgatgtggaattctaagttagcttctacttatacatacacgaatttgatcaaaaaattcagaaaataannnnnnnnatgggaactatta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28786397 |
gacataacctctgatgtggaattctaagttagcttctacttatacaaagacgaatttgatcaaaaaattcagaaaataaattttttcatgggaactatta |
28786496 |
T |
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| Q |
319 |
cgattgcaat-nnnnnnntcttcaaacctataaactcttcgatgtgaaaataggtctgtcttgtttgttcata |
390 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28786497 |
cgattgcaataaaaaaaatcttcaaacctataaactcttcgatgtgaaaataggtctgtcttgtttgttcata |
28786569 |
T |
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