View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3342_low_24 (Length: 396)

Name: NF3342_low_24
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3342_low_24
NF3342_low_24
[»] chr6 (1 HSPs)
chr6 (19-390)||(23507603-23507974)
[»] chr2 (5 HSPs)
chr2 (308-360)||(16942455-16942507)
chr2 (308-360)||(17013120-17013172)
chr2 (308-351)||(15120016-15120059)
chr2 (314-360)||(36643665-36643711)
chr2 (295-351)||(28572531-28572587)
[»] chr4 (1 HSPs)
chr4 (319-362)||(50247989-50248032)
[»] chr3 (2 HSPs)
chr3 (295-360)||(34285420-34285485)
chr3 (331-360)||(46895919-46895948)
[»] scaffold0370 (1 HSPs)
scaffold0370 (314-356)||(474-516)


Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 23507603 - 23507974
Alignment:
Q  19 ggacactaccatgctcaaaaagagtaatgatgttatcaaaatatagtatcttctaagacactaaatgatgttttattcctcgacataggctaaataaggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23507603 ggacactaccatgctcaaaaagagtaatgatgttatcaaaatatagtatcttctaagacactaaatgatgttttattcctcgacataggctaaataaggt 23507702  T
Q  119 aatcaaagcatttcatgggaacatgctatatatagctcttttctgttttgattcaaaaaaggtctttactcctttaataatttttgtactatgttgagnn 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||      
T  23507703 aatcaaagcatttcatgggaacatgctatatatagctcttttctgttttgattcaaaaaaggtctttactcctttaataatttttgtactatattgagaa 23507802  T
Q  219 nnnnnctaagcaatgtattgttttataaaattcatgtaccgacaaatacaaaatcttacatgatnnnnnnngaaaagaaatgataatgggtgccctaagg 318  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  23507803 aaaaactaagcaatgtattgttttataaaattcatgtaccgacaaatacaaaatcttacatgataaaaaaagaaaagaaatgataatgggtgccctaagg 23507902  T
Q  319 gtactctttcacaaccttaaatagtaagtttttataaaaattaagagcaaatagtcactttagtctctgctc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23507903 gtactctttcacaaccttaaatagtaagtttttataaaaattaagagcaaatagtcactttagtctctgctc 23507974  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 16942507 - 16942455
Alignment:
Q  308 gtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaatt 360  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  16942507 gtgccctaagggcactctttaacaaccttaaatagcaagtttttataaaaatt 16942455  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 17013172 - 17013120
Alignment:
Q  308 gtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaatt 360  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  17013172 gtgccctaagggcactctttaacaaccttaaatagcaagtttttataaaaatt 17013120  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 15120016 - 15120059
Alignment:
Q  308 gtgccctaagggtactctttcacaaccttaaatagtaagttttt 351  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||    
T  15120016 gtgccctaagggcactctttaacaaccttaaatagtaagctttt 15120059  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 36643711 - 36643665
Alignment:
Q  314 taagggtactctttcacaaccttaaatagtaagtttttataaaaatt 360  Q
    |||||| ||||||  |||||||||||||||||||||||||| |||||    
T  36643711 taagggcactcttcgacaaccttaaatagtaagtttttatagaaatt 36643665  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 28572531 - 28572587
Alignment:
Q  295 gaaatgataatgggtgccctaagggtactctttcacaaccttaaatagtaagttttt 351  Q
    |||||| ||| | ||||||||||| |||| ||| ||||| |||||||||||||||||    
T  28572531 gaaatgttaacgagtgccctaaggatactttttaacaactttaaatagtaagttttt 28572587  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 50248032 - 50247989
Alignment:
Q  319 gtactctttcacaaccttaaatagtaagtttttataaaaattaa 362  Q
    ||||||||| |||||||||||||||||||||||||| |||||||    
T  50248032 gtactctttaacaaccttaaatagtaagtttttatagaaattaa 50247989  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 34285485 - 34285420
Alignment:
Q  295 gaaatgataatgggtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaatt 360  Q
    |||||| ||| | |||| ||||||||||||||| | ||| ||||||||||| ||||||||||||||    
T  34285485 gaaatgttaacgagtgctctaagggtactctttaataactttaaatagtaaatttttataaaaatt 34285420  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Original strand, 46895919 - 46895948
Alignment:
Q  331 aaccttaaatagtaagtttttataaaaatt 360  Q
    ||||||||||||||||||||||||||||||    
T  46895919 aaccttaaatagtaagtttttataaaaatt 46895948  T

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Target: scaffold0370 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 356
Target Start/End: Complemental strand, 516 - 474
Alignment:
Q  314 taagggtactctttcacaaccttaaatagtaagtttttataaa 356  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||    
T  516 taagggcactctttaacaaccttaaatagtaagtttttgtaaa 474  T

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