View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_25 (Length: 377)
Name: NF3342_low_25
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 27560107 - 27560418
Alignment:
| Q |
1 |
attgcaatcaaattcatttcagtccgagacatgctctaagacttagaaggtaaaatataagtgacactcaattaaatttaatctcaaatgaggaaaatgt |
100 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560107 |
attgcaatcaaattcgtttcagtccgagacatgctctaagatttagaaggtaaaatataagtgacactcaattaaatttaatctcaaatgaggaaaatgt |
27560206 |
T |
|
| Q |
101 |
atttgttgtacaaaagaggcgttgaagaactaaatacatacagataaagaaaaacaccaaggtagacttaccaatgcttttgaagactttattttcaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27560207 |
atttgttgtacaaaagaggcgttgaagaactaaatacatacagataaagaaaaacaccaaggtagacttaccaatgcttttgaagactttatttccaaaa |
27560306 |
T |
|
| Q |
201 |
cctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgtatagtatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27560307 |
cctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgtatggtatt |
27560406 |
T |
|
| Q |
301 |
aattcaaggaca |
312 |
Q |
| |
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|||||||||||| |
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| T |
27560407 |
aattcaaggaca |
27560418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 166 - 354
Target Start/End: Original strand, 36667764 - 36667943
Alignment:
| Q |
166 |
acttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatca |
265 |
Q |
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|||||||| ||||||||| |||||||||| | || |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36667764 |
acttaccattgcttttgacgactttatttccgaatcctgctcagcacatttgtttgcaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatca |
36667863 |
T |
|
| Q |
266 |
ataaaccttaatgcttaaaaagtatgtatagtattaattcaaggacaataacccgcctacaccctcttgcggtataatccagccaacat |
354 |
Q |
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|||||||||||||||||| |||||||||| |||||||||| ||| |||||| | ||||| || |||||||||||||||||| |
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| T |
36667864 |
ataaaccttaatgcttaa---------atagtattaactcaaggacaagaactcgcctataacctctggcagtataatccagccaacat |
36667943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 36667688 - 36667728
Alignment:
| Q |
21 |
agtccgagacatgctctaagacttagaaggtaaaatataag |
61 |
Q |
| |
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|||| |||||||||||||| | ||||||||||||||||||| |
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| T |
36667688 |
agtcagagacatgctctaaaatttagaaggtaaaatataag |
36667728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 140 - 318
Target Start/End: Complemental strand, 24203628 - 24203449
Alignment:
| Q |
140 |
acagataaagaaaaacaccaaggta-gacttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcg |
238 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||||| |||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||| |||||| |
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| T |
24203628 |
acagataaagaaaaacacaaaggtaagacttaccaatgtttttgaagtcttcattcccaaaacctgttcagcacatttatttgcaaggctcttcagttcg |
24203529 |
T |
|
| Q |
239 |
cttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgtatagtattaattcaaggacaataacc |
318 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |
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| T |
24203528 |
cttgtccgcttcaaaacaaaggaaccaataaaccttaatgcttaaaaagtatgtatggtataaattcaaggacaagaacc |
24203449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 30870622 - 30870681
Alignment:
| Q |
231 |
tgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgt |
292 |
Q |
| |
|
|||||| | |||||||||||||||| |||| ||||||||| |||||||| |||||||||||| |
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|
| T |
30870622 |
tgagtttgattgtctgcttcaaaac-aagggatcaataaatcttaatgc-taaaaagtatgt |
30870681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 157 - 353
Target Start/End: Original strand, 29409684 - 29409880
Alignment:
| Q |
157 |
ccaaggtagacttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaaca |
256 |
Q |
| |
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|||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |
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| T |
29409684 |
ccaaagtagactcaccaatgcttttgaagacttcatttccaaaacctgttcagcacatttgtttgcaaagctcttgagttcgcttgtctgcttcaaaaca |
29409783 |
T |
|
| Q |
257 |
aaggaatcaataaaccttaatgcttaaaaagtatgtatagtattaattcaaggacaataacccgcctacaccctcttgcggtataatccagccaaca |
353 |
Q |
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||||| || |||||||||||||||||||||||||| ||| || ||||||||||| |||||||||| | ||||||| ||||| |||| |||||| |
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| T |
29409784 |
aaggacataacgaaccttaatgcttaaaaagtatgtatggtactagttcaaggacaagaacccgcctataaactcttgcagtatattccaaccaaca |
29409880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 29409539 - 29409614
Alignment:
| Q |
27 |
agacatgctctaagacttagaaggta---aaatataagtgacactcaattaaatttaatctcaaatgaggaaaatg |
99 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29409539 |
agacatgctctaagatttagaaggtactaaaatacaagtgacactcaattaaatttaatctcaaatgaggaaaatg |
29409614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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