View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3342_low_28 (Length: 368)

Name: NF3342_low_28
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3342_low_28
NF3342_low_28
[»] chr2 (12 HSPs)
chr2 (129-358)||(35348092-35348319)
chr2 (127-358)||(35343400-35343628)
chr2 (135-358)||(35355655-35355876)
chr2 (202-350)||(35371569-35371708)
chr2 (183-358)||(35346048-35346220)
chr2 (202-358)||(35374345-35374492)
chr2 (269-315)||(35364350-35364396)
chr2 (204-315)||(35368225-35368333)
chr2 (202-315)||(35335586-35335699)
chr2 (146-218)||(35351227-35351299)
chr2 (147-218)||(35340805-35340876)
chr2 (21-65)||(35347994-35348038)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 9e-86; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 129 - 358
Target Start/End: Original strand, 35348092 - 35348319
Alignment:
Q  129 cttagcatatcgtatatctaattccattttcttcttttcaacatacacttttta-catagccagcgttaaaacaaaaatggcatccatttctttggccat 227  Q
    ||||||||||| |||| ||||||||||||||||||||  |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| ||    
T  35348092 cttagcatatcatataactaattccattttcttctttataacatacattttttaacatagccagcgtaaaaacaaaaatggcatccatttctttggctat 35348191  T
Q  228 tactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatcttgcattgaagaagataatcgcaatgga 327  Q
    |||||||||||||||||| ||||||||  |||||||||||   ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  35348192 tactccaaagtgcaagcatcatggatacagtgaaggtaac---ggtgattggtttggttatacaagtgtatcttgcattaaagaagataatcgcaatgga 35348288  T
Q  328 gatcgagactcatgcaaggaaggtgatgatg 358  Q
    |||||||||||||||||||||||||||||||    
T  35348289 gatcgagactcatgcaaggaaggtgatgatg 35348319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 127 - 358
Target Start/End: Original strand, 35343400 - 35343628
Alignment:
Q  127 atcttagcatatcgtatatctaattccattttcttcttttcaacatacactttttacatagccagcgttaaaacaaaaatggcatccatttctttggcca 226  Q
    ||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||    
T  35343400 atcttagcatatcatataactaattccattttcttctttttaacatacacttttcacatagccagcgtaaaaaccaaaatggcatccatttctttggcca 35343499  T
Q  227 ttactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatcttgcattgaagaagataatcgcaatgg 326  Q
    ||| |||||||||| |||||||||||||||||||||||   |||||||||||| || ||||||||||||||||||||||||||||| || ||| ||||||    
T  35343500 ttattccaaagtgcgagcagcatggatatggtgaaggt---aacggtgattggattagttatacatgtgtatcttgcattgaagaaaattatcacaatgg 35343596  T
Q  327 agatcgagactcatgcaaggaaggtgatgatg 358  Q
    |||||||||||||||||| ||||| |||||||    
T  35343597 agatcgagactcatgcaaagaaggcgatgatg 35343628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 135 - 358
Target Start/End: Complemental strand, 35355876 - 35355655
Alignment:
Q  135 atatcgtatatctaattccattttcttcttttc-aacatacactttttacatagccagcgttaaaacaaaaatggcatccatttctttggccattactcc 233  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| |||||||||||||    
T  35355876 atatcatataactaattccattttcttcttttccaacatacactttttacatagcaagcgtcaaaaccaaaatggcatcaatttctatggccattactcc 35355777  T
Q  234 aaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatcttgcattgaagaagataatcgcaatggagatcga 333  Q
    |||||||||| |||||||||||| |||||||   || |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  35355776 aaagtgcaaggagcatggatatgatgaaggt---aatggtgattggtttggttatacatatgtatcttgcattgaagaagattatcgcaatggagatcga 35355680  T
Q  334 gactcatgcaaggaaggtgatgatg 358  Q
    ||||| | || |||||| |||||||    
T  35355679 gactcttacatggaaggcgatgatg 35355655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 202 - 350
Target Start/End: Complemental strand, 35371708 - 35371569
Alignment:
Q  202 aaaatggcatccatttctttggccattactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatctt 301  Q
    ||||||||||||||||   ||| |||| ||| |||||||||||| |||| |||||||||||||||         |||||||| ||||||| |||||||||    
T  35371708 aaaatggcatccattttgatggtcattgctctaaagtgcaagcaacatgtatatggtgaaggtaa---------ttggtttgattatacaagtgtatctt 35371618  T
Q  302 gcattgaagaagataatcgcaatggagatcgagactcatgcaaggaagg 350  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  35371617 gcattgaagaagattaccgcaatggagatcgagactcatgcaaggaagg 35371569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 183 - 358
Target Start/End: Complemental strand, 35346220 - 35346048
Alignment:
Q  183 catagccagcgttaaaacaaaaatggcatccatttctttggccattactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggttt 282  Q
    |||||||||| | ||||| ||||||||||||||||    || |||| |||||  |||||||||| ||| || |||||||||   ||||||||||||||||    
T  35346220 catagccagcttcaaaactaaaatggcatccattttcacggtcattgctccattgtgcaagcagaatgcatgtggtgaagg---caacggtgattggttt 35346124  T
Q  283 ggttatacatgtgtatcttgcattgaagaagataatcgcaatggagatcgagactcatgcaaggaaggtgatgatg 358  Q
    |||||||||| ||||||||| |||| ||||||| |||||||||| |||| ||| || | ||||||||| |||||||    
T  35346123 ggttatacatctgtatcttgtattgtagaagattatcgcaatggggatcaagattcttacaaggaaggcgatgatg 35346048  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 202 - 358
Target Start/End: Complemental strand, 35374492 - 35374345
Alignment:
Q  202 aaaatggcatccatttctttggccattactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatctt 301  Q
    |||||||||||||||||  ||| |||| ||| ||| |||||||| |||| |||||||||||||||         |||||||| ||||||| |||||||||    
T  35374492 aaaatggcatccatttccatggtcattgctctaaactgcaagcaacatgcatatggtgaaggtaa---------ttggtttgattatacaagtgtatctt 35374402  T
Q  302 gcattgaagaagataatcgcaatggagatcgagactcatgcaaggaaggtgatgatg 358  Q
    |||||||||||||| |||  || ||||| ||||| || | | |||||||||||||||    
T  35374401 gcattgaagaagattatcataacggagaccgagattcttaccaggaaggtgatgatg 35374345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 35364396 - 35364350
Alignment:
Q  269 acggtgattggtttggttatacatgtgtatcttgcattgaagaagat 315  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  35364396 acggtgattggttcggttatacgtgtgtatcttgcattgaagaagat 35364350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 35368333 - 35368225
Alignment:
Q  204 aatggcatccatttctttggccattactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatcttgc 303  Q
    ||||| || ||||||  ||| |||| ||| ||| ||||||||||||| ||||||||||||| |    | |||||||||||||| ||||| |||||||||     
T  35368333 aatggtattcatttccatggtcattgctctaaactgcaagcagcatgcatatggtgaaggtgaa---gttgattggtttggttgtacatctgtatcttgt 35368237  T
Q  304 attgaagaagat 315  Q
    ||||||||||||    
T  35368236 attgaagaagat 35368225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 35335699 - 35335586
Alignment:
Q  202 aaaatggcatccatttctttggccattactccaaagtgcaagcagcatggat---atggtgaaggtaacaacggtgattggtttggttatacatgtgtat 298  Q
    |||||||||||||||||  ||| |||| |||||||||||||||| |||| ||   | ||||||||   | || |||||||||||||||| |||  | |||    
T  35335699 aaaatggcatccatttccatggtcattgctccaaagtgcaagcaacatgcatttaacggtgaagg---cgactgtgattggtttggttacacaaatatat 35335603  T
Q  299 cttgcattgaagaagat 315  Q
    |||||||||||||||||    
T  35335602 cttgcattgaagaagat 35335586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 35351299 - 35351227
Alignment:
Q  146 ctaattccattttcttcttttcaacatacactttttacatagccagcgttaaaacaaaaatggcatccatttc 218  Q
    ||||||||||||||||||||| || | | |||||| |||||  |||||| ||||| |||||||||||||||||    
T  35351299 ctaattccattttcttcttttaaatacaaacttttcacataatcagcgtcaaaaccaaaatggcatccatttc 35351227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 35340876 - 35340805
Alignment:
Q  147 taattccattttcttcttttcaacatacactttttacatagccagcgttaaaacaaaaatggcatccatttc 218  Q
    |||||||||||||||||||| | || |||||||| ||||||||| | | | ||| |||||| ||||||||||    
T  35340876 taattccattttcttcttttaatcacacacttttaacatagccaacctcacaaccaaaatgacatccatttc 35340805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 35347994 - 35348038
Alignment:
Q  21 tgcttgtggtagaacaactcaactacttctcttcttgatatatat 65  Q
    |||||||| |||||| ||||||| ||||||||||||| |||||||    
T  35347994 tgcttgtgttagaactactcaacaacttctcttcttgttatatat 35348038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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