View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_3 (Length: 606)
Name: NF3342_low_3
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 14 - 603
Target Start/End: Original strand, 31067918 - 31068507
Alignment:
| Q |
14 |
cacggatcctctaaaaacttgttcctcacttgcttggcgtccatttcacttaaatgaggagtcacataggtttcgaccaactcaaaattgaacgttgcaa |
113 |
Q |
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| T |
31067918 |
cacggatcctctaaaaacttgttcctcacttgcttggcgtccatttcacttaaatgaggagtcacataggtttcgaccaactcaaaattgaacgttgcaa |
31068017 |
T |
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| Q |
114 |
aagggaaaaaagttaggggaatgttgnnnnnnnaataggagccgaactcacaactagtggaaagttaggggaacaaaagtgtgtttaaacctattattta |
213 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31068018 |
aagggaaaaaagttaggggaatgttgtttttttaataggagccgaactcataactagtggaaagttaggggaacaaaagtgtgtttaaacctattattta |
31068117 |
T |
|
| Q |
214 |
aaaacgtcctctccctttgaatattgttttaattgcttcatttttagcttctcatgaatttttaattttaagcttcatgttgcttcattttatttccatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31068118 |
aaaacgtcctctccctttgaatattgttttaattgcttcatttttagcttctcatgaatttttaattttaagcttcatgttgcttcattttatttccatt |
31068217 |
T |
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| Q |
314 |
gctcttgtcaaatgaatattttttaattccnnnnnnnggattgttgctctttgtttcatatttgcattctcggctataacttttgcaattcattgtttgc |
413 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31068218 |
gctcttgtcaaatgaatattttttaattccaaaaaaaggattgttgctctttgtttcatatttgcattctcggctataacttttgcaattcattgtttgc |
31068317 |
T |
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| Q |
414 |
taaccataatattctatcttcatctttcgacaaataaacaatttaaacgaggaaaacaaatagattaaagaaattaaagcatataagatcaagaattcca |
513 |
Q |
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| T |
31068318 |
taaccataatattctatcttcatctttcgacaaataaacaatttaaacgaggaaaacaaatagattaaagaaattaaagcatataagatcaagaattcca |
31068417 |
T |
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| Q |
514 |
tatctatgttggatcttgaaggatttttggtatgttggtttttgaatatttttggtgataagattagatgttgttgttgatgatggtgtg |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31068418 |
tatctatgttggatcttgaaggatttttggtatgttggtttttgaatatttttggtgataagattagatgttgttgttgatgatggtgtg |
31068507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 302 - 414
Target Start/End: Original strand, 41491762 - 41491874
Alignment:
| Q |
302 |
tttatttccattgctcttgtcaaatgaatattttttaattccnnnnnnnggattgttgctctttgtttcatatttgcattctcggctataacttttgcaa |
401 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||| || |||||||||||| ||| ||||||| ||||| |
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| T |
41491762 |
tttatttccattgctcttgtcaaatgattattttttatttccaaaaaaagaattgttgctctttggtttgtatttgcattctgggccataacttctgcaa |
41491861 |
T |
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| Q |
402 |
ttcattgtttgct |
414 |
Q |
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| T |
41491862 |
ttcattgtttgct |
41491874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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