View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_33 (Length: 338)
Name: NF3342_low_33
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 3757481 - 3757726
Alignment:
| Q |
9 |
agcagagaacaaaattgctttgacaaccaccatatatgtaacttgcattctccgacacacacgttgtactacaagatgcatcattagtacaaggccctaa |
108 |
Q |
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| T |
3757481 |
agcaaagaacaaaattgctttgacaagcaccatatatgtaacttgcattctccgacacacacgttgtactacaagatgcatcattagtacaaggccctaa |
3757580 |
T |
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| Q |
109 |
ccatgctctacttttctttctacaaatttcttctttctcctctacacgtacaaatgaaaaataatcatgaagcaaattaagaacacaaataaggtttaga |
208 |
Q |
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| T |
3757581 |
ccatgctctacttttctttctacaaatttcttctttctcctctacacgtacaaatgaaaaataatcatgaagcaaattaagaacacaaataaggtttaga |
3757680 |
T |
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| Q |
209 |
tcaattgaagaagtataagagaatagattaaatatagcttgcttag |
254 |
Q |
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| T |
3757681 |
tcaattgaagaagtataagagaataaattaaatatagcttgcttag |
3757726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 3762047 - 3762117
Alignment:
| Q |
254 |
gatttgacatatttttatgcgtttaactttcgatttttcaattatgtgtatcagctttcgatgatgatttt |
324 |
Q |
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| T |
3762047 |
gatttgacatttttttatgcgtttaactttcgatttttcaattatgtgtaccagctttcgatgatgatttt |
3762117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 3754754 - 3754857
Alignment:
| Q |
52 |
tgcattctccgacacacacgttgtactacaagatgcatcattagtacaaggccctaaccatgctctacttttctttctacaaatttcttctttctcctct |
151 |
Q |
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| T |
3754754 |
tgcatgctccgaaacacacgttgtactacaagacaagttattaatacaaagccctaaccatgttatacttttctttctacaaacttctgcttccacctct |
3754853 |
T |
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| Q |
152 |
acac |
155 |
Q |
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|||| |
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| T |
3754854 |
acac |
3754857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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