View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3342_low_37 (Length: 323)
Name: NF3342_low_37
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_37 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 49008882 - 49008575
Alignment:
| Q |
16 |
ctatcctcaacttgtatgccaccttttcatttttctccttaaacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008882 |
ctatcctcaacttgtatgccaccttttcatttttctccttaaacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggc |
49008783 |
T |
|
| Q |
116 |
tacgtagatggttggttcctctccaacattggttactgttctttgaaattcttgtgtaatcacctttgatttaacactagcattattgaaaaaggaaata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008782 |
tacgtagatggttggttcctctccaacattggttactgttctttgaaattcttgtgtaatcacctttgatttaacactagcattattgaaaaaggaaata |
49008683 |
T |
|
| Q |
216 |
aaagaagggtaattaaggtccaaagaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattcttctgagtgaagtttaatgcacata |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49008682 |
aaagaagggtaattaaggtccaaagaagggttagaacaattgttaaaagacgatctcgtgatggctgcgatattcttctgagtgaagtttaatgcacata |
49008583 |
T |
|
| Q |
316 |
gaagattc |
323 |
Q |
| |
|
|||||||| |
|
|
| T |
49008582 |
gaagattc |
49008575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 9947862 - 9947920
Alignment:
| Q |
57 |
aacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggc |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||||| |
|
|
| T |
9947862 |
aacaccaacttgtttgggataacactgacatgaaaccctttgataggagtaatgttggc |
9947920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 8958694 - 8958637
Alignment:
| Q |
42 |
tcatttttctccttaaacaccaacttgtttgggataacactaacatggaacccttcaa |
99 |
Q |
| |
|
||||| ||||| || || ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8958694 |
tcattcttctcattgaataccaacttgtttgggataacactgacatggaacccttcaa |
8958637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 8945391 - 8945503
Alignment:
| Q |
57 |
aacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggctacgtagatggttggttcctctccaacattggttactgttc |
156 |
Q |
| |
|
|||| |||||| ||||||||| |||||||| || | ||||||| ||| ||||| | || || || |||| | || |||| ||||||||||| ||||||| |
|
|
| T |
8945391 |
aacatcaacttatttgggatagcactaacacggtatccttcaacaggcataatgctagcaacataaatggcttgtccctcaccaacattggtaactgttc |
8945490 |
T |
|
| Q |
157 |
tttgaaattcttg |
169 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
8945491 |
tgtgaaattcttg |
8945503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 8975089 - 8975049
Alignment:
| Q |
57 |
aacaccaacttgtttgggataacactaacatggaacccttc |
97 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
8975089 |
aacaccaacttatttgggataactctaacatggaacccttc |
8975049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 25927947 - 25927991
Alignment:
| Q |
42 |
tcatttttctccttaaacaccaacttgtttgggataacactaaca |
86 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
25927947 |
tcattcttctcattaaacactaacttgtttgggataacactaaca |
25927991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University