View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_41 (Length: 314)
Name: NF3342_low_41
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 11656068 - 11655770
Alignment:
| Q |
1 |
ccttgcccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaacgag |
100 |
Q |
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| T |
11656068 |
ccttgcccatcaattccacttgtacaactcatgctagggagactcaaattctccaccatcgcaatatcattgttgaatccgtcattaccaacaaaacgag |
11655969 |
T |
|
| Q |
101 |
ctacggaacaatctggggagaacaagcttgacgtttcatactcttttgcaccgcccattattggcatttttgctccaatgttcacacgactcacatagtt |
200 |
Q |
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| T |
11655968 |
ctaccgaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcatttttgctccaatgttcacacgactcacatagtt |
11655869 |
T |
|
| Q |
201 |
aggtttatatgtttggcccaacacgccactcacttcattgctcaaagacaagaatttgaagcctaaatcaaggtgagcaaaacaatcatctttggtgat |
299 |
Q |
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| T |
11655868 |
aggtttatatgtttggcccaacacaccacttacttcattgctcaaagacaagaatttgaaccctaaatcaagatgagcaaaacaatcatctttggtgat |
11655770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 11669830 - 11669538
Alignment:
| Q |
7 |
ccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaacgagctacgg |
106 |
Q |
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||||||| |||| ||||||||||||||||||||| | | || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
11669830 |
ccatcaacaccacttgtgcaactcatgctagggagcataagatcttccaccatcgcaatatcattgttgaatccgtcattaccaacaaaacgagctacgg |
11669731 |
T |
|
| Q |
107 |
aacaatctggggagaacaagcttgacgtttcatactcttttgcaccgcccattattggcatttttgctccaatgttcacacgactcacatagttaggttt |
206 |
Q |
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| T |
11669730 |
aacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcattttcgctccaatgttcacacgactcacatagttagattt |
11669631 |
T |
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| Q |
207 |
atatgtttggcccaacacgccactcacttcattgctcaaagacaagaatttgaagcctaaatcaaggtgagcaaaacaatcatctttggtgat |
299 |
Q |
| |
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| T |
11669630 |
atatgtttggcccaacacaccacttacttcattgctcaaagacaagaatttgaaccctaaatcaagatgagcaaaacaatcatctttggtgat |
11669538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 299
Target Start/End: Original strand, 7343977 - 7344269
Alignment:
| Q |
7 |
ccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaacgagctacgg |
106 |
Q |
| |
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||||||||||||| |||||| ||| ||||||||| ||||||||||| | ||||||| ||||| ||||| | || |||| ||||| ||||| | |
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| T |
7343977 |
ccatcaattccacttgtgcatttcaagctagggagggccaaattctccatagttccaatatctttgtttaatccagtgtttccaatgaaacgtgctacag |
7344076 |
T |
|
| Q |
107 |
aacaatctggggagaacaagcttgacgtttcatactcttttgcaccgcccattattggcatttttgctccaatgttcacacgactcacatagttaggttt |
206 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7344077 |
aacaatctggagagaacaagcttgacgtttcatactcttttgcaccgcccattattggcattcttgctccaatgttcacacgactcacatagttaggttt |
7344176 |
T |
|
| Q |
207 |
atatgtttggcccaacacgccactcacttcattgctcaaagacaagaatttgaagcctaaatcaaggtgagcaaaacaatcatctttggtgat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7344177 |
atatgtttggcccaacacgccactcacttcattgctcaaagacaagaatttgaagcctaaatcaaggtgagcaaaacaatcatctttggtgat |
7344269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 11664519 - 11664227
Alignment:
| Q |
7 |
ccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaacgagctacgg |
106 |
Q |
| |
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||||||||||||| |||||| |||| ||||||||| |||||||||||| || |||||| ||||| ||||| || || |||| ||||| || || | |
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| T |
11664519 |
ccatcaattccacttgtgcagctcaagctagggagggccaaattctccacaattccaatatttttgtttaatccattgttcccaatgaaacgtgccacag |
11664420 |
T |
|
| Q |
107 |
aacaatctggggagaacaagcttgacgtttcatactcttttgcaccgcccattattggcatttttgctccaatgttcacacgactcacatagttaggttt |
206 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11664419 |
aacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattattggcatttttgcaccaatgttcacacgactcacatagttaggttt |
11664320 |
T |
|
| Q |
207 |
atatgtttggcccaacacgccactcacttcattgctcaaagacaagaatttgaagcctaaatcaaggtgagcaaaacaatcatctttggtgat |
299 |
Q |
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|||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
11664319 |
atatgtttggcccaacacaccatttacttcattgctcaaagacaagaatttgaaccctaaatcaagatgagcaaaacaatcatctttggtgat |
11664227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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