View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_42 (Length: 312)
Name: NF3342_low_42
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_42 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 2792524 - 2792821
Alignment:
| Q |
19 |
gatccgtccgttctcgcccacgaaagcatgccttttgggtcggcaacatggatcgcttacgctgtcttctgctgttttattgttctattttccggactca |
118 |
Q |
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| T |
2792524 |
gatccatccgttctcgcccacgaaagcataccttttgggtcggcaacatggatcgcttacgctgtcttctgctgttttattgttctattttccggactca |
2792623 |
T |
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| Q |
119 |
tgtccggtctcaccattggtttcttgtctcaaaaaatcattaacttagaaattctcaaactaagtggttcttcttttgnnnnnnnncaagctggtaactg |
218 |
Q |
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| T |
2792624 |
tgtccggtctcaccattggtttcttgtctcaaaaaatcattaacttagaaattctcaaactaagtggttcttcttctgagaaaaaacaagctggtaacta |
2792723 |
T |
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| Q |
219 |
ttc-ctttaacacatagtttaagtaatattatttgttattgttgttatgattgaaaac---ctaattcaccttattatgcatgcagcaatcataattc |
312 |
Q |
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| T |
2792724 |
ttctttttaacacatagtttaagtaatattgtttgttattgttgttaccattgaaaactcaacaattcaccttattatgcatgcagaaatcataattc |
2792821 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 16387794 - 16387912
Alignment:
| Q |
30 |
tctcgcccacgaaagcatgccttttgggtcggcaacatggatcgcttacgctgtcttctgctgttttattgttctattttccggactcatgtccggtctc |
129 |
Q |
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| T |
16387794 |
tctcgccaacgaaggcataccttttggttctgcaacatggattgcttacgccggaatatgctgttttcttgttctctttgccggagtcatgtccggtctc |
16387893 |
T |
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| Q |
130 |
accattggtttcttgtctc |
148 |
Q |
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| T |
16387894 |
acacttggtctcatgtctc |
16387912 |
T |
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