View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_44 (Length: 310)
Name: NF3342_low_44
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 11328348 - 11328072
Alignment:
| Q |
14 |
gaacctgtgcattacaccatagaatttaattgacaaatataataagtattaattnnnnnnnnnnnnnnnnnnttatttgatacttacagtttcatattgt |
113 |
Q |
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| T |
11328348 |
gaacctgtgcattacaccatagaatttaattgacaaatataataagtattaattaaaaaaaaaggaaaaa--ttatttgatacttacagtttcatattgt |
11328251 |
T |
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| Q |
114 |
tctttcaaaatttcttttgtcatgtcatttttctcactgcattattcacaaacttatcaagaaacatctcccacaagagaggatgaagaaaaaattgaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11328250 |
tctttcaaaatttcttttgtcatgtcatttttctcactgcattattcacaaacttatcaagaaacatctcccacaagagaggatgaagaaaaaattgaaa |
11328151 |
T |
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| Q |
214 |
gaaagatgaaattataaatattgatagaataataaagtaattacatcaagccattttcgagacttatgcatagaataag |
292 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11328150 |
gaaagatgaaattaaaaaaattgatagaataataaagtaattacatcaagccattttcaagacttatgcatagaataag |
11328072 |
T |
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